Browse Element(s) Details


Os.34696.2.S1_at

Description gb:AK059365.1
DB_XREF= gi:32969383
TID=Os.34696.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34696 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0426D06.10 (P0426D06.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-026-E05, full insert sequence.
FL= gb:AK059365.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2185010/11protein transport protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21810OsAffx.23331.1.S1_s_at11/111+12215016..12217248hypothetical protein
LOC_Os01g21810Os.10381.1.S1_at1/111+12215016..12217248hypothetical protein
LOC_Os01g21820Os.27425.1.S1_at11/111+12217806..12230606Preprotein translocase secA subunit, chloroplast precursor, putative, expressed
LOC_Os01g21830OsAffx.11151.1.S1_at11/111+12231086..12231889hypothetical protein
LOC_Os01g21840Os.35344.18.S1_x_at7/111+12233468..12240200transposon protein, putative, Mutator sub-class
LOC_Os01g21840OsAffx.22940.5.S1_at7/111+12233468..12240200transposon protein, putative, Mutator sub-class
LOC_Os01g21840Os.35344.3.S1_x_at6/111+12233468..12240200transposon protein, putative, Mutator sub-class
LOC_Os01g21840OsAffx.22940.5.S1_x_at3/111+12233468..12240200transposon protein, putative, Mutator sub-class
LOC_Os01g21850Os.34696.2.S1_x_at11/111+12240632..12245527protein transport protein, putative, expressed
LOC_Os01g21850Os.34696.1.S1_x_at11/111+12240632..12245527protein transport protein, putative, expressed
LOC_Os01g21850Os.34696.2.S1_at10/111+12240632..12245527protein transport protein, putative, expressed
LOC_Os01g21850Os.34696.1.S1_at9/111+12240632..12245527protein transport protein, putative, expressed
LOC_Os01g21860Os.1107.2.S1_s_at11/111+12247392..12251519expressed protein
LOC_Os01g21860Os.1107.1.S1_at11/111+12247392..12251519expressed protein
LOC_Os01g21860Os.48883.1.S1_at11/111+12247392..12251519expressed protein
LOC_Os01g21870NANA1+12252518..12252883expressed protein
LOC_Os01g21880NANA1+12262627..12263007expressed protein
LOC_Os01g21890OsAffx.2054.2.S1_at11/111+12265391..12273250NA
LOC_Os01g21890OsAffx.2054.2.S1_x_at11/111+12265391..12273250NA
LOC_Os01g21890OsAffx.23347.2.S1_x_at5/111+12265391..12273250NA
LOC_Os01g21890OsAffx.23347.2.S1_at4/111+12265391..12273250NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34696.2.S1_at--644--5791Chr01:12241789..12241813 (25 bp)
GAGCTCCGTTTTCCGGCTCCCAGGA
LOC_Os01g21850
Os.34696.2.S1_at--481--3651NONE
CTTTCATTCAAAGAAGGGAGCTCTC
NONE
Os.34696.2.S1_at--1055--10511Chr01:12241378..12241784 (25 bp)
TTCATTCAAAGAAGGGAGCTCTCAG
LOC_Os01g21850
Os.34696.2.S1_at--1152--10531Chr01:12241060..12241084 (25 bp)
TTCATCCACTTTGATGACCATAGTT
LOC_Os01g21850
Os.34696.2.S1_at--1137--9611Chr01:12241059..12241083 (25 bp)
TCATCCACTTTGATGACCATAGTTT
LOC_Os01g21850
Os.34696.2.S1_at--749--10771Chr01:12241050..12241074 (25 bp)
TTGATGACCATAGTTTCTGCGAGTG
LOC_Os01g21850
Os.34696.2.S1_at--989--8851Chr01:12241049..12241073 (25 bp)
TGATGACCATAGTTTCTGCGAGTGG
LOC_Os01g21850
Os.34696.2.S1_at--490--6311Chr01:12241048..12241072 (25 bp)
GATGACCATAGTTTCTGCGAGTGGA
LOC_Os01g21850
Os.34696.2.S1_at--440--691Chr01:12241047..12241071 (25 bp)
ATGACCATAGTTTCTGCGAGTGGAT
LOC_Os01g21850
Os.34696.2.S1_at--682--6351Chr01:12241025..12241049 (25 bp)
GATGCGCAGCCTCAAATTGGTTCCA
LOC_Os01g21850
Os.34696.2.S1_at--1120--3131Chr01:12241011..12241035 (25 bp)
AATTGGTTCCACCTGAACCAAGCTA
LOC_Os01g21850
Target Sequence 
GAGCTCCGTTTTCCGGCTCCCAGGATACTTTCATTCAAAGAAGGGAGCTCTCAGGCTAGATATTTTGTCTCACGCCTTAT
CCCAGCTCACAAGGACCCTACTTATGAGCAGGAGTCAAGATTTCCTCAGTTACGGACACTTACTCCTGAACAAAGGTCTA
GGTTGAAGAGCAGCTTCATCCACTTTGATGACCATAGTTTCTGCGAGTGGATGCGCAGCCTCAAATTGGTTCCACCTGAA
CCAAGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34696.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis