Browse Element(s) Details


OsAffx.11151.1.S1_at

Description tigr:9629.m02090
TID=OsAffx.11151.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2183011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21780OsAffx.23331.3.S1_s_at11/111+12202829..12206780hypothetical protein
LOC_Os01g21780OsAffx.23331.2.S1_at9/111+12202829..12206780hypothetical protein
LOC_Os01g21780OsAffx.23331.2.S1_x_at8/111+12202829..12206780hypothetical protein
LOC_Os01g21790NANA1+12207604..12208247hypothetical protein
LOC_Os01g21800NANA1+12213643..12214037hypothetical protein
LOC_Os01g21810OsAffx.23331.1.S1_s_at11/111+12215016..12217248hypothetical protein
LOC_Os01g21810Os.10381.1.S1_at1/111+12215016..12217248hypothetical protein
LOC_Os01g21820Os.27425.1.S1_at11/111+12217806..12230606Preprotein translocase secA subunit, chloroplast precursor, putative, expressed
LOC_Os01g21830OsAffx.11151.1.S1_at11/111+12231086..12231889hypothetical protein
LOC_Os01g21840Os.35344.18.S1_x_at7/111+12233468..12240200transposon protein, putative, Mutator sub-class
LOC_Os01g21840OsAffx.22940.5.S1_at7/111+12233468..12240200transposon protein, putative, Mutator sub-class
LOC_Os01g21840Os.35344.3.S1_x_at6/111+12233468..12240200transposon protein, putative, Mutator sub-class
LOC_Os01g21840OsAffx.22940.5.S1_x_at3/111+12233468..12240200transposon protein, putative, Mutator sub-class
LOC_Os01g21850Os.34696.2.S1_x_at11/111+12240632..12245527protein transport protein, putative, expressed
LOC_Os01g21850Os.34696.1.S1_x_at11/111+12240632..12245527protein transport protein, putative, expressed
LOC_Os01g21850Os.34696.2.S1_at10/111+12240632..12245527protein transport protein, putative, expressed
LOC_Os01g21850Os.34696.1.S1_at9/111+12240632..12245527protein transport protein, putative, expressed
LOC_Os01g21860Os.1107.2.S1_s_at11/111+12247392..12251519expressed protein
LOC_Os01g21860Os.1107.1.S1_at11/111+12247392..12251519expressed protein
LOC_Os01g21860Os.48883.1.S1_at11/111+12247392..12251519expressed protein
LOC_Os01g21870NANA1+12252518..12252883expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11151.1.S1_at--40--10211Chr01:12231833..12231857 (25 bp)
TATTATTGCCTCGAGAAGCCCTTCA
LOC_Os01g21830
OsAffx.11151.1.S1_at--189--10511Chr01:12231812..12231836 (25 bp)
TTCAACGGCTACCTCAGCGGGCCTT
LOC_Os01g21830
OsAffx.11151.1.S1_at--133--9651Chr01:12231799..12231823 (25 bp)
TCAGCGGGCCTTCCGAACCTGGACG
LOC_Os01g21830
OsAffx.11151.1.S1_at--323--2631Chr01:12231784..12231808 (25 bp)
AACCTGGACGCCTACGAGAGCTTCA
LOC_Os01g21830
OsAffx.11151.1.S1_at--414--6011Chr01:12231769..12231793 (25 bp)
GAGAGCTTCACCGTCATTGATGGCC
LOC_Os01g21830
OsAffx.11151.1.S1_at--100--7131Chr01:12231757..12231781 (25 bp)
GTCATTGATGGCCTCAAGCCCAAAA
LOC_Os01g21830
OsAffx.11151.1.S1_at--1018--2591Chr01:12231742..12231766 (25 bp)
AAGCCCAAAAATGTCCGCGCCTTTG
LOC_Os01g21830
OsAffx.11151.1.S1_at--82--3691Chr01:12231722..12231746 (25 bp)
CTTTGTCGACCTCGTGTTTGCTCGA
LOC_Os01g21830
OsAffx.11151.1.S1_at--471--8871Chr01:12231146..12231170 (25 bp)
TGATGAGTGGGTCCTCGTCAAGCCA
LOC_Os01g21830
OsAffx.11151.1.S1_at--1004--2651Chr01:12231127..12231151 (25 bp)
AAGCCATTGCTGACGTCTCTCATAA
LOC_Os01g21830
OsAffx.11151.1.S1_at--338--5771Chr01:12231116..12231140 (25 bp)
GACGTCTCTCATAATCATGTCACCC
LOC_Os01g21830
Target Sequence 
TATTATTGCCTCGAGAAGCCCTTCAACGGCTACCTCAGCGGGCCTTCCGAACCTGGACGCCTACGAGAGCTTCACCGTCA
TTGATGGCCTCAAGCCCAAAAATGTCCGCGCCTTTGTCGACCTCGTGTTTGCTCGACAGCTTCTTAACGAGGTGAATGGG
AACGGGATGCAGACCAGGGATGATGAGTGGGTCCTCGTCAAGCCATTGCTGACGTCTCTCATAATCATGTCACCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11151.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis