Browse Element(s) Details


OsAffx.11147.1.S1_at

Description tigr:9629.m02073
TID=OsAffx.11147.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2166010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21650Os.21817.1.S1_at11/111+12112075..12115679expressed protein
LOC_Os01g21660OsAffx.11147.1.S1_at10/111+12137166..12139111hypothetical protein
LOC_Os01g21660OsAffx.22887.1.S1_at5/111+12137166..12139111hypothetical protein
LOC_Os01g21670Os.34727.1.S1_at11/111+12139940..12144249expressed protein
LOC_Os01g21680OsAffx.9256.1.S1_at11/111+12146251..12146561hypothetical protein
LOC_Os01g21690Os.47004.1.S1_at1/111+12149214..12152896retrotransposon protein, putative, unclassified
LOC_Os01g21700OsAffx.23331.2.S1_x_at3/111+12158638..12159207hypothetical protein
LOC_Os01g21700OsAffx.23331.2.S1_at2/111+12158638..12159207hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11147.1.S1_at--918--6311Chr01:12138419..12138440 (22 bp)
GATGAAGAGGGCCTTAACAATCAAG
LOC_Os01g21660
OsAffx.11147.1.S1_at--268--2231Chr01:12138432..12138456 (25 bp)
ACAATCAAGTGTAGGGTCTTAACCA
LOC_Os01g21660
OsAffx.11147.1.S1_at--925--7691Chr01:12138445..12138469 (25 bp)
GGGTCTTAACCAAGTACTATGCCAT
LOC_Os01g21660
OsAffx.11147.1.S1_at--1064--9371NONE
TCGAGTGGACGCAGGCTATGATCGT
NONE
OsAffx.11147.1.S1_at--994--5791Chr01:12138524..12139024 (25 bp)
GACGCAGGCTATGATCGTGTTCCTA
LOC_Os01g21660
OsAffx.11147.1.S1_at--465--911Chr01:12139005..12139029 (25 bp)
AGGCTATGATCGTGTTCCTAACCAC
LOC_Os01g21660
OsAffx.11147.1.S1_at--476--6831Chr01:12139016..12139040 (25 bp)
GTGTTCCTAACCACGGAGGGTGAAT
LOC_Os01g21660
OsAffx.11147.1.S1_at--748--9591Chr01:12139023..12139047 (25 bp)
TAACCACGGAGGGTGAATTCAAGGT
LOC_Os01g21660
OsAffx.11147.1.S1_at--263--5211Chr01:12139037..12139061 (25 bp)
GAATTCAAGGTTGTTCCGACATCTA
LOC_Os01g21660
OsAffx.11147.1.S1_at--382--7911Chr01:12139045..12139069 (25 bp)
GGTTGTTCCGACATCTATTGAACCA
LOC_Os01g21660
OsAffx.11147.1.S1_at--129--451Chr01:12139057..12139081 (25 bp)
ATCTATTGAACCAATTGTCATCTTC
LOC_Os01g21660
Target Sequence 
GATGAAGAGGGCCTTAACAATCAAGTGTAGGGTCTTAACCAAGTACTATGCCATGGCAAGTGAGGACAAGTTCAACAACC
TTTTGAGGCGGATCGAGGAGTTCGAGTGGACGCAGGCTATGATCGTGTTCCTAACCACGGAGGGTGAATTCAAGGTTGTT
CCGACATCTATTGAACCAATTGTCATCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11147.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis