Browse Element(s) Details


Os.15206.1.S1_at

Description gb:AK107088.1
DB_XREF= gi:32992297
TID=Os.15206.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15206 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0028G04.28 (P0028G04.28), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-121-G08, full insert sequence.
FL= gb:AK107088.1 gb:AK067689.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2163011/11Pectinesterase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21590OsAffx.11145.1.S1_s_at11/111+12074114..12076082expressed protein
LOC_Os01g21600NANA1+12081472..12084709retrotransposon protein, putative, unclassified
LOC_Os01g21610Os.32197.2.S1_x_at11/111+12091352..12093194Chaperone-activity of bc1 complex-like, mitochondrial precursor, putative, expressed
LOC_Os01g21620OsAffx.23327.1.S1_s_at11/111+12095465..12096325expressed protein
LOC_Os01g21620OsAffx.23327.2.S1_at10/111+12095465..12096325expressed protein
LOC_Os01g21630Os.15206.1.S1_at11/111+12099588..12105507Pectinesterase, putative, expressed
LOC_Os01g21640OsAffx.11146.2.A1_at11/111+12108903..12109714expressed protein
LOC_Os01g21650Os.21817.1.S1_at11/111+12112075..12115679expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15206.1.S1_at--976--4611Chr01:12104612..12104636 (25 bp)
GCGAGTCTGCAAGTTCAACCGCGCA
LOC_Os01g21630
Os.15206.1.S1_at--340--9051Chr01:12104656..12104816 (25 bp)
TGCAGTTCCTGCAAGGTTTCAGAGA
LOC_Os01g21630
Os.15206.1.S1_at--998--7351Chr01:12104833..12104857 (25 bp)
GTGAGAGTCTTCTCCGAGTCGAGGA
LOC_Os01g21630
Os.15206.1.S1_at--116--2591Chr01:12104860..12104884 (25 bp)
AACGGGCTGTTCATCAACTCGTGCT
LOC_Os01g21630
Os.15206.1.S1_at--80--1151Chr01:12104897..12104921 (25 bp)
AGTCCGAGCTGACGGCCACCTGGAA
LOC_Os01g21630
Os.15206.1.S1_at--1024--9491Chr01:12104929..12104950 (22 bp)
TCTCCTGCTCTCCAGAACAAGGGAA
LOC_Os01g21630
Os.15206.1.S1_at--136--1051Chr01:12105153..12105177 (25 bp)
AGGTGAAGGCCATCGATTGCCCCTA
LOC_Os01g21630
Os.15206.1.S1_at--964--7351Chr01:12105250..12105274 (25 bp)
GTGACACACATTTTTGCCTCGAAGT
LOC_Os01g21630
Os.15206.1.S1_at--583--9171Chr01:12105264..12105288 (25 bp)
TGCCTCGAAGTCCTCTCAAGTTCTT
LOC_Os01g21630
Os.15206.1.S1_at--881--1211Chr01:12105282..12105306 (25 bp)
AGTTCTTCACTCTAGCTAGTAGCTA
LOC_Os01g21630
Os.15206.1.S1_at--898--7591Chr01:12105422..12105446 (25 bp)
GGGCAGGGCACATTAATATCGGGAA
LOC_Os01g21630
Target Sequence 
GCGAGTCTGCAAGTTCAACCGCGCAGCCTGCAACGCGTCTCAGCTGCAGTTCCTGCAAGGTTTCAGAGATCAGATGGTGG
CAGCGGTGAGAGTCTTCTCCGAGTCGAGGANCAACGGGCTGTTCATCAACTCGTGCTTCGCTCACTGCCAGTCCGAGCTG
ACGGCCACCTGGAATGGTGGCTCTCCTGCTCTCCAGAACAAGGGAATTGCAAAGTCTGTTGGTGACTGGTACTTTGGTCG
AGCTGAGGTGAAGGCCATCGATTGCCCCTACCCCTGTGACAAAACATGCCACAACATCATATGACATCATGNACTGACGT
TTACTCGNCTCGACCGAATGGAGTGACACACATTTTTGCCTCGAAGTCCTCTCAAGTTCTTCACTCTAGCTAGTAGCTAT
ATACATGTAGAACTATCGAGTTCAGAGCCAAAACATACAAAACAGAGAACCTCACACAAACAGATACAAAGGAAGCAAAA
CAAAGTTAACAAAAGCAAATAGGAAGGGGGAGAGGGGCAGGGCACATTAATATCGGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15206.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis