Browse Element(s) Details


OsAffx.23327.2.S1_at

Description tigr:9629.m02068
TID=OsAffx.23327.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2162010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21590OsAffx.11145.1.S1_s_at11/111+12074114..12076082expressed protein
LOC_Os01g21600NANA1+12081472..12084709retrotransposon protein, putative, unclassified
LOC_Os01g21610Os.32197.2.S1_x_at11/111+12091352..12093194Chaperone-activity of bc1 complex-like, mitochondrial precursor, putative, expressed
LOC_Os01g21620OsAffx.23327.1.S1_s_at11/111+12095465..12096325expressed protein
LOC_Os01g21620OsAffx.23327.2.S1_at10/111+12095465..12096325expressed protein
LOC_Os01g21630Os.15206.1.S1_at11/111+12099588..12105507Pectinesterase, putative, expressed
LOC_Os01g21640OsAffx.11146.2.A1_at11/111+12108903..12109714expressed protein
LOC_Os01g21650Os.21817.1.S1_at11/111+12112075..12115679expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000038biological_processvery-long-chain fatty acid metabolism
GO:0030497biological_processfatty acid elongation
GO:0042335biological_processcuticle biosynthesis
GO:0008415molecular_functionacyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23327.2.S1_at--880--1731Chr01:12095518..12095698 (25 bp)
ACCATCGAGTAGCAGCTCGCACTGG
LOC_Os01g21620
OsAffx.23327.2.S1_at--45--3551Chr01:12095520..12095700 (25 bp)
CATCGAGTAGCAGCTCGCACTGGTA
LOC_Os01g21620
OsAffx.23327.2.S1_at--678--511Chr01:12095681..12095701 (21 bp)
ATCGAGTAGCAGCTCGCACTGGTAC
LOC_Os01g21620
OsAffx.23327.2.S1_at--322--9371Chr01:12095681..12095702 (22 bp)
TCGAGTAGCAGCTCGCACTGGTACA
LOC_Os01g21620
OsAffx.23327.2.S1_at--1160--4051NONE
CGAGTAGCAGCTCGCACTGGTACAA
NONE
OsAffx.23327.2.S1_at--332--1191Chr01:12095681..12095705 (25 bp)
AGTAGCAGCTCGCACTGGTACAAGC
LOC_Os01g21620
OsAffx.23327.2.S1_at--963--6951Chr01:12095682..12095706 (25 bp)
GTAGCAGCTCGCACTGGTACAAGCT
LOC_Os01g21620
OsAffx.23327.2.S1_at--1067--10011Chr01:12095683..12095707 (25 bp)
TAGCAGCTCGCACTGGTACAAGCTC
LOC_Os01g21620
OsAffx.23327.2.S1_at--220--8411Chr01:12095974..12095998 (25 bp)
GGCCCGCGTCGTTGCGGCCGGTTGC
LOC_Os01g21620
OsAffx.23327.2.S1_at--601--9171Chr01:12096019..12096043 (25 bp)
TGCCGCATCCCGCTCGGGAGCGCAC
LOC_Os01g21620
OsAffx.23327.2.S1_at--135--5891Chr01:12096036..12096195 (25 bp)
GAGCGCACGCGCGGGTATTTACGTC
LOC_Os01g21620
Target Sequence 
ACCATCGAGTAGCAGCTCGCACTGGTACAAGCTCGCCTACGCCGAGGCCAAAGGGCGCGTCCGCCGCGGCCACCGCGTTT
GGCAGATCGGCTTCGGCTTAGGCTTCAGGTGCAACATCACCGTCTGGCGTGCACTCCGCGACGTGCCACCCGTGTACGCC
TTCGTCACGGCGGCGTGGCCCATGGCCTTGCTCGGCGGCTCGTTCGCCGCCGGCGTCGCCCGACGCTATCGCCGTCCGCC
ACGCTGCCTCCCCATCCACCCGATGCCGCCGGGCCGCCTTCAGGCCGCCACCGTCGCCTCGGCCCGCGTCGTTGCGGCCG
GTTGCTGGCCGCGCCGTCGCGCACCTGCCGCATCCCGCTCGGGAGCGCACGCGCGGGTATTTACGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23327.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis