Browse Element(s) Details


Os.32197.2.S1_x_at

Description gb:NM_183761.1
DB_XREF= gi:34894649
GEN=P0028G04.26
TID=Os.32197.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.32197 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative ABC(ATP binding cassette)1 protein (P0028G04.26), mRNA.
PROD=putative ABC(ATP binding cassette)1 protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2161011/11Chaperone-activity of bc1 complex-like, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21590OsAffx.11145.1.S1_s_at11/111+12074114..12076082expressed protein
LOC_Os01g21600NANA1+12081472..12084709retrotransposon protein, putative, unclassified
LOC_Os01g21610Os.32197.2.S1_x_at11/111+12091352..12093194Chaperone-activity of bc1 complex-like, mitochondrial precursor, putative, expressed
LOC_Os01g21620OsAffx.23327.1.S1_s_at11/111+12095465..12096325expressed protein
LOC_Os01g21620OsAffx.23327.2.S1_at10/111+12095465..12096325expressed protein
LOC_Os01g21630Os.15206.1.S1_at11/111+12099588..12105507Pectinesterase, putative, expressed
LOC_Os01g21640OsAffx.11146.2.A1_at11/111+12108903..12109714expressed protein
LOC_Os01g21650Os.21817.1.S1_at11/111+12112075..12115679expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0017004biological_processcytochrome complex assembly
GO:0005746cellular_componentmitochondrial electron transport chain
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32197.2.S1_x_at--482--8391Chr01:12092350..12092374 (25 bp)
GGCGCAGCTCGTGATTTTCCAAAAC
LOC_Os01g21610
Os.32197.2.S1_x_at--228--4711Chr01:12092543..12092567 (25 bp)
GCTGGTGTCTTAGAAATGTCCCGCA
LOC_Os01g21610
Os.32197.2.S1_x_at--236--1171Chr01:12092599..12092623 (25 bp)
AGTCATGCTGGATGCTCATGTCCAA
LOC_Os01g21610
Os.32197.2.S1_x_at--613--9591Chr01:12092631..12092655 (25 bp)
TCATTGTTGGTGTGCCATTCGCAAA
LOC_Os01g21610
Os.32197.2.S1_x_at--218--1551Chr01:12092654..12092678 (25 bp)
AAACCAGGTGGTCACGATTTCCGTG
LOC_Os01g21610
Os.32197.2.S1_x_at--1129--271Chr01:12092694..12092718 (25 bp)
ATAGTGTTTCCAACCTCGGAGCTAC
LOC_Os01g21610
Os.32197.2.S1_x_at--1054--5331Chr01:12092753..12092777 (25 bp)
GAAGTTTACAGCCTCCACAGAAAGT
LOC_Os01g21610
Os.32197.2.S1_x_at--570--2811Chr01:12092774..12092798 (25 bp)
AAGTTGTCAGGTGCATTCCTAGCCT
LOC_Os01g21610
Os.32197.2.S1_x_at--817--9951Chr01:12092820..12092844 (25 bp)
TACCCTGTAGGGAGATGCTGTTCAA
LOC_Os01g21610
Os.32197.2.S1_x_at--830--6391Chr01:12092873..12092897 (25 bp)
GATCGTCCGGAAGTATTGTCCAGCA
LOC_Os01g21610
Os.32197.2.S1_x_at--202--10491Chr01:12092959..12092983 (25 bp)
TTACAGGTCGGTTGCAGCTCATTTT
LOC_Os01g21610
Target Sequence 
GGCGCAGCTCGTGATTTTCCAAAACGTTTTGTGGACGACTACCTTCGTATGGTAGTTGCCTGTGCGAACAAGGATAGAGC
TGGTGTCTTAGAAATGTCCCGCAGACTAGGATTTCTCACAGGTGAGGAACCGGAAGTCATGCTGGATGCTCATGTCCAAG
CTGCCTTCATTGTTGGTGTGCCATTCGCAAAACCAGGTGGTCACGATTTCCGTGCAAACAACATCACACATAGTGTTTCC
AACCTCGGAGCTACCATGTTGAAGCACAGGCTGACGCCACCACCCGACGAAGTTTACAGCCTCCACAGAAAGTTGTCAGG
TGCATTCCTAGCCTGCATCAAGATAGGGGCAGTTGTACCCTGTAGGGAGATGCTGTTCAAGGTTTATGAGCAATACAATT
TCAGCGATGATCGTCCGGAAGTATTGTCCAGCACCGGATAGAAATATGAAAGGCCAACCTTTTGCCGCACTTTCCCTTTT
GGGGGAACTTTAAATAGTTACAGGTCGGTTGCAGCTCATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32197.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis