Browse Element(s) Details


OsAffx.22894.1.S1_at

Description gb:NM_183750.1
DB_XREF= gi:34894627
GEN=P0028G04.13
TID=OsAffx.22894.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0028G04.13 (P0028G04.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g215428/11retrotransposon protein, putative, unclassified
LOC_Os05g036501/11retrotransposon protein, putative, unclassified
LOC_Os05g225801/11retrotransposon protein, putative, unclassified
LOC_Os09g398301/11retrotransposon protein, putative, unclassified
LOC_Os09g081701/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21520NANA1+12014451..12014735esterase/lipase/thioesterase family protein, putative
LOC_Os01g21530OsAffx.20729.1.S1_x_at4/111+12017450..12022689retrotransposon protein, putative, unclassified
LOC_Os01g21530OsAffx.21171.4.S1_x_at1/111+12017450..12022689retrotransposon protein, putative, unclassified
LOC_Os01g21530OsAffx.21171.5.S1_x_at1/111+12017450..12022689retrotransposon protein, putative, unclassified
LOC_Os01g21530OsAffx.21171.3.S1_x_at1/111+12017450..12022689retrotransposon protein, putative, unclassified
LOC_Os01g21536Os.45173.1.S1_x_at3/111+12026271..12032467retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g21542OsAffx.22894.1.S1_at8/111+12035105..12035557retrotransposon protein, putative, unclassified
LOC_Os01g21550NANA1+12039758..12040204hypothetical protein
LOC_Os01g21560Os.37776.1.S1_at11/111+12050165..12051591esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os01g21570OsAffx.2051.1.S1_at8/111+12054836..12055227NA
LOC_Os01g21580Os.37776.1.S1_at1/111+12057202..12057519esterase/lipase/thioesterase family protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22894.1.S1_at--889--8271Chr01:12035501..12035525 (25 bp)
GGCATCACACATCACGGCGGATAGG
LOC_Os01g21542
OsAffx.22894.1.S1_at--1074--2076Chr09:4232074..4232104 (24 bp)
ACATCACGGCGGATAGGCACCTTAG
LOC_Os09g08170
OsAffx.22894.1.S1_at--65--5831Chr01:12035409..12035433 (25 bp)
GACCGCGGTACTCGGATCGATTCGT
LOC_Os01g21542
OsAffx.22894.1.S1_at--1116--9431Chr01:12035398..12035422 (25 bp)
TCGGATCGATTCGTGCACCTCCTGT
LOC_Os01g21542
OsAffx.22894.1.S1_at--118--1291Chr01:12035241..12035265 (25 bp)
AGATGTTCGTTAGGGTCCGGCAGAC
LOC_Os01g21542
OsAffx.22894.1.S1_at--950--10431Chr01:12035232..12035256 (25 bp)
TTAGGGTCCGGCAGACGATGCGATT
LOC_Os01g21542
OsAffx.22894.1.S1_at--29--8271Chr01:12035223..12035247 (25 bp)
GGCAGACGATGCGATTGTTCCAGTT
LOC_Os01g21542
OsAffx.22894.1.S1_at--416--6351Chr01:12035216..12035240 (25 bp)
GATGCGATTGTTCCAGTTCTTCTTC
LOC_Os01g21542
OsAffx.22894.1.S1_at--949--3811Chr01:12034873..12034897 (25 bp)
CTCCAAGAGCGGTCCCGCGAAGCGT
NONE
OsAffx.22894.1.S1_at--251--231Chr01:12034842..12034866 (25 bp)
ATATTGGACCCAACGATCTCATGCG
NONE
OsAffx.22894.1.S1_at--971--451Chr01:12034831..12034851 (21 bp)
ATCTCATGCGCACTCATGTGGCCGA
NONE
Target Sequence 
GGCATCACACATCACGGCGGATAGGCACCTTAGCCTCCCCCGCAAGATTATGCCGGAGGGGGCCGCCCTGAGGGCGGGGG
AGTCGCGACCGCGACCGCGGTACTCGGATCGATTCGTGCACCTCCTGTCCTTCGCCATGGTGGGGTTGGTCCCTCCATTC
TCCAGGTTCTTCCACGAGGTTTTGGATTTCTATGAGATCCACGCCTTGCATCTCGCACCCAACGCCGTGATGACGCTGGC
CATCTTCGCGCATCTGTGTGAGATGTTCGTTAGGGTCCGGCAGACGATGCGATTGTTCCAGTTCTTCTTCGTCCCGCAGC
TGCTGCAAGCATGGTTGGCGGCTTCGGAGCTGGGCGAGCAGTACGACGCCGTGCGGGACCGCCTCAGGGGCCTGCGAAGC
CAGGGCCTTACGGGGGCGATGGTCTTTGGTGATTACTTCCATTGCCGCATCGCACCTCTCCAAGAGCGGTCCCGCGAAGC
GTGGAAGTATATTGGACCCAACGATCTCATGCGCACTCATGTGGCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22894.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis