Browse Element(s) Details


Os.37921.2.S1_at

Description gb:AK071014.1
DB_XREF= gi:32981037
TID=Os.37921.2
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37921 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1070A12.19 (B1070A12.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023079O17, full insert sequence.
FL= gb:AK071014.1 gb:AK104311.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5765011/11zinc finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57610Os.36449.1.S1_at11/111+33635296..33637781Indole-3-acetic acid-amido synthetase GH3.6, putative, expressed
LOC_Os01g57620Os.28605.1.S1_at11/111+33643891..33644760expressed protein
LOC_Os01g57630Os.22276.1.S1_a_at11/111+33644887..33649756pentatricopeptide, putative, expressed
LOC_Os01g57650Os.37921.2.S1_at11/111+33656401..33658783zinc finger family protein, putative, expressed
LOC_Os01g57660OsAffx.23827.1.S1_x_at11/111+33668491..33668869hypothetical protein
LOC_Os01g57660OsAffx.23827.1.S1_at11/111+33668491..33668869hypothetical protein
LOC_Os01g57670OsAffx.9512.1.S1_x_at11/111+33670503..33673718transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g57670OsAffx.9512.1.S1_at10/111+33670503..33673718transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g57670OsAffx.8455.1.S1_at2/111+33670503..33673718transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g57670OsAffx.12338.1.S1_at1/111+33670503..33673718transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g57680NANA1+33674791..33675153hypothetical protein
LOC_Os01g57690OsAffx.9390.1.S1_at11/111+33677093..33677974Plastocyanin-like domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0031225cellular_componentanchored to membrane
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37921.2.S1_at--129--5151Chr01:33656956..33656980 (25 bp)
GCAACGAGCTGCTCCGATTCCACGG
LOC_Os01g57650
Os.37921.2.S1_at--177--7931Chr01:33656840..33656864 (25 bp)
GGATTCTCCGCCAAGAAGGAAGGCA
LOC_Os01g57650
Os.37921.2.S1_at--1096--5011Chr01:33656677..33656701 (25 bp)
GCAGGGTGCACAAGCCGCTCGAGAA
LOC_Os01g57650
Os.37921.2.S1_at--809--4231Chr01:33656546..33656570 (25 bp)
CCGTGCTTCGTGGTCATCTGCAAGG
LOC_Os01g57650
Os.37921.2.S1_at--24--7831Chr01:33656535..33656559 (25 bp)
GGTCATCTGCAAGGCTTAACTCCAG
LOC_Os01g57650
Os.37921.2.S1_at--971--2531Chr01:33656518..33656542 (25 bp)
AACTCCAGAGTCATGCATTGCAAAC
LOC_Os01g57650
Os.37921.2.S1_at--496--3591Chr01:33656470..33656494 (25 bp)
CATTCTTTCCTTCGTGTACTAGCTA
LOC_Os01g57650
Os.37921.2.S1_at--33--10611Chr01:33656460..33656484 (25 bp)
TTCGTGTACTAGCTACCGATCGGTT
LOC_Os01g57650
Os.37921.2.S1_at--412--4851Chr01:33656449..33656473 (25 bp)
GCTACCGATCGGTTGCCAGCTTGTT
LOC_Os01g57650
Os.37921.2.S1_at--1045--4491Chr01:33656424..33656448 (25 bp)
GCCGTCTCTTCTGTATGAGCTAGTA
LOC_Os01g57650
Os.37921.2.S1_at--542--8911Chr01:33656409..33656433 (25 bp)
TGAGCTAGTATCCATCAGATGCATT
LOC_Os01g57650
Target Sequence 
GCAACGAGCTGCTCCGATTCCACGGCGCCACGCTCTCCTGCGCGCTCGGCGGCGCGGCGGGCTCCTCCAGCCTCTGCGCC
TCCGACAAGTGCGCCGTCTGCCGCATCATCCGCCACGGATTCTCCGCCAAGAAGGAAGGCAAGGCCGGCGTCGGCGTCTT
CACCACGTCCACCAGCGGCCGCGCCTACGAGTCCATCGAGGCCTCCGCCGGCGCCGTCGTCGGTGGCGACGACCCGGCGG
CGACGCGCAAGGCGCTGCTGGTGTGCAGGGTCATCGCCGGCAGGGTGCACAAGCCGCTCGAGAACCTCAAGGAGTTCGCC
GGACAGACCGGCTTCGACTCGCTCGCCGGCAAGGTCGGGCCCTACTCCAACATCGAGGAGCTCTACCTGCTGAACCCGAG
GGCGCTGCTCCCGTGCTTCGTGGTCATCTGCAAGGCTTAACTCCAGAGTCATGCATTGCAAACGACTAATTAATCAAGTA
ATTAACCATTCTTTCCTTCGTGTACTAGCTACCGATCGGTTGCCAGCTTGTTGCCGTCTCTTCTGTATGAGCTAGTATCC
ATCAGATGCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37921.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis