Browse Element(s) Details


Os.38084.1.S1_at

Description gb:AK065233.1
DB_XREF= gi:32975251
TID=Os.38084.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38084 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002H15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002H15, full insert sequence.
FL= gb:AK065233.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2471010/11hydrolase, alpha/beta fold family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24670Os.5442.1.S1_at11/119+14680406..14686126CAAX amino terminal protease family protein
LOC_Os09g24670OsAffx.17879.1.S1_at11/119+14680406..14686126CAAX amino terminal protease family protein
LOC_Os09g24680OsAffx.6387.1.S1_at11/119+14686747..14689179pentatricopeptide, putative
LOC_Os09g24690Os.11043.1.S1_x_at11/119+14690168..1469212060S ribosomal protein L34, putative, expressed
LOC_Os09g24690Os.11043.2.S1_at9/119+14690168..1469212060S ribosomal protein L34, putative, expressed
LOC_Os09g24700Os.5722.1.S1_at11/119+14693433..14698067expressed protein
LOC_Os09g24700Os.5722.2.S1_at11/119+14693433..14698067expressed protein
LOC_Os09g24710Os.38084.2.S1_x_at11/119+14710642..14715764hydrolase, alpha/beta fold family protein, expressed
LOC_Os09g24710Os.38084.1.S1_at10/119+14710642..14715764hydrolase, alpha/beta fold family protein, expressed
LOC_Os09g24720OsAffx.6388.1.A1_x_at9/119+14728630..14730118hypothetical protein
LOC_Os09g24720Os.5353.1.S1_at4/119+14728630..14730118hypothetical protein
LOC_Os09g24730OsAffx.30005.1.S1_at10/119+14730887..14732819hypothetical protein
LOC_Os09g24740NANA9+14737436..14742086retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38084.1.S1_at--1093--5551Chr09:14715086..14715110 (25 bp)
GAAAGGTGCACGGTTTGTCCCGGCT
LOC_Os09g24710
Os.38084.1.S1_at--1017--6851Chr09:14715098..14715122 (25 bp)
GTTTGTCCCGGCTGCATTCTTGACA
LOC_Os09g24710
Os.38084.1.S1_at--55--4771Chr09:14715108..14715128 (21 bp)
GCTGCATTCTTGACAGGCCTTGAAT
LOC_Os09g24710
Os.38084.1.S1_at--421--10751NONE
TTGAATGCCCCTGTCCAAACAAGGG
NONE
Os.38084.1.S1_at--782--3151Chr09:14715154..14715178 (25 bp)
AATTCCTTCAGCTGTTTGCCAAGTT
LOC_Os09g24710
Os.38084.1.S1_at--61--5411Chr09:14715246..14715270 (25 bp)
GAAGCTCTCAGAGGCGCCAAAGGCG
LOC_Os09g24710
Os.38084.1.S1_at--727--4551Chr09:14715259..14715283 (25 bp)
GCGCCAAAGGCGTGACAAAATTCGT
LOC_Os09g24710
Os.38084.1.S1_at--993--3131Chr09:14715277..14715301 (25 bp)
AATTCGTGGAGGTTCCAGGTGCCCT
LOC_Os09g24710
Os.38084.1.S1_at--170--10591Chr09:14715301..14715325 (25 bp)
TTCTGCCGCAGGAGGAATTCCCATC
LOC_Os09g24710
Os.38084.1.S1_at--978--3151Chr09:14715316..14715340 (25 bp)
AATTCCCATCACCAGTCGCGGAGGA
LOC_Os09g24710
Os.38084.1.S1_at--1140--4671Chr09:14715333..14715357 (25 bp)
GCGGAGGAACTCTACAGCTTTCTGA
LOC_Os09g24710
Target Sequence 
GAAAGGTGCACGGTTTGTCCCGGCTGCATTCTTGACAGGCCTTGAATGCCCCTGTCCAAACAAGGGAAGAATTCCTTCAG
CTGTTTGCCAAGTTGGAAGCTCTCAGAGGCGCCAAAGGCGTGACAAAATTCGTGGAGGTTCCAGGTGCCCTTCTGCCGCA
GGAGGAATTCCCATCACCAGTCGCGGAGGAACTCTACAGCTTTCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38084.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis