Browse Element(s) Details


Os.5722.1.S1_at

Description gb:AK107000.1
DB_XREF= gi:32992209
TID=Os.5722.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5722 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-120-C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-C03, full insert sequence.
FL= gb:AK107000.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2470011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24650Os.16405.1.S1_at11/119+14670645..14675767Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g24660Os.47978.1.A1_at11/119+14676524..14680075zinc finger motif, C2HC5-type family protein, expressed
LOC_Os09g24670Os.5442.1.S1_at11/119+14680406..14686126CAAX amino terminal protease family protein
LOC_Os09g24670OsAffx.17879.1.S1_at11/119+14680406..14686126CAAX amino terminal protease family protein
LOC_Os09g24680OsAffx.6387.1.S1_at11/119+14686747..14689179pentatricopeptide, putative
LOC_Os09g24690Os.11043.1.S1_x_at11/119+14690168..1469212060S ribosomal protein L34, putative, expressed
LOC_Os09g24690Os.11043.2.S1_at9/119+14690168..1469212060S ribosomal protein L34, putative, expressed
LOC_Os09g24700Os.5722.1.S1_at11/119+14693433..14698067expressed protein
LOC_Os09g24700Os.5722.2.S1_at11/119+14693433..14698067expressed protein
LOC_Os09g24710Os.38084.2.S1_x_at11/119+14710642..14715764hydrolase, alpha/beta fold family protein, expressed
LOC_Os09g24710Os.38084.1.S1_at10/119+14710642..14715764hydrolase, alpha/beta fold family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5722.1.S1_at--878--5111Chr09:14695113..14695137 (25 bp)
GCAATAGGTATGCACATTTTTACCA
LOC_Os09g24700
Os.5722.1.S1_at--637--1691Chr09:14695086..14695110 (25 bp)
ACCAGTTTACCCTTATTTATCTCAG
LOC_Os09g24700
Os.5722.1.S1_at--1153--171Chr09:14695072..14695096 (25 bp)
ATTTATCTCAGATTCTAGTACTAAT
LOC_Os09g24700
Os.5722.1.S1_at--208--5111Chr09:14695042..14695066 (25 bp)
GCACTAGAGTACAGTTGCTACTTTT
LOC_Os09g24700
Os.5722.1.S1_at--955--6651Chr09:14695029..14695053 (25 bp)
GTTGCTACTTTTGTAACTATCAAGC
LOC_Os09g24700
Os.5722.1.S1_at--717--7051Chr09:14695017..14695041 (25 bp)
GTAACTATCAAGCATAGCATCCACT
LOC_Os09g24700
Os.5722.1.S1_at--1156--4951Chr09:14695006..14695030 (25 bp)
GCATAGCATCCACTAGCTTTTTAAA
LOC_Os09g24700
Os.5722.1.S1_at--1033--9031Chr09:14694964..14694988 (25 bp)
TGCAGCTTTATGATGCTTTCCCTAG
LOC_Os09g24700
Os.5722.1.S1_at--650--6331Chr09:14694953..14694977 (25 bp)
GATGCTTTCCCTAGCAAATTTTTTG
LOC_Os09g24700
Os.5722.1.S1_at--651--10351Chr09:14694934..14694958 (25 bp)
TTTTTGTTCAACTCAATGTCCTAAA
LOC_Os09g24700
Os.5722.1.S1_at--854--10351Chr09:14694900..14694924 (25 bp)
TTTTTGGTTGCTTGAAATTCTGTTG
LOC_Os09g24700
Target Sequence 
GCAATAGGTATGCACATTTTTACCATTACCAGTTTACCCTTATTTATCTCAGATTCTAGTACTAATATTTAGCACTAGAG
TACAGTTGCTACTTTTGTAACTATCAAGCATAGCATCCACTAGCTTTTTAAAGCTAGTTAAGGACAAGATGCAGCTTTAT
GATGCTTTCCCTAGCAAATTTTTTGTTCAACTCAATGTCCTAAAAGATATATTTTTTTGGTTGCTTGAAATTCTGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5722.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis