Browse Element(s) Details


Os.16405.1.S1_at

Description gb:AK062467.1
DB_XREF= gi:32972485
TID=Os.16405.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16405 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-103-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-103-E03, full insert sequence.
FL= gb:AK062467.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2465011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24590OsAffx.17880.1.S1_x_at1/119+14648796..14649157expressed protein
LOC_Os09g24600OsAffx.17877.1.S1_x_at11/119+14651111..14651560adenosylmethionine decarboxylase family protein, putative
LOC_Os09g24610OsAffx.30004.2.S1_at11/119+14653564..14654280expressed protein
LOC_Os09g24620Os.22832.1.S1_at11/119+14658941..14660267expressed protein
LOC_Os09g24630OsAffx.17878.1.S1_at6/119+14660674..14663151hypothetical protein
LOC_Os09g24640Os.8268.1.S1_at11/119+14665246..14666808pentatricopeptide, putative, expressed
LOC_Os09g24650Os.16405.1.S1_at11/119+14670645..14675767Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g24660Os.47978.1.A1_at11/119+14676524..14680075zinc finger motif, C2HC5-type family protein, expressed
LOC_Os09g24670Os.5442.1.S1_at11/119+14680406..14686126CAAX amino terminal protease family protein
LOC_Os09g24670OsAffx.17879.1.S1_at11/119+14680406..14686126CAAX amino terminal protease family protein
LOC_Os09g24680OsAffx.6387.1.S1_at11/119+14686747..14689179pentatricopeptide, putative
LOC_Os09g24690Os.11043.1.S1_x_at11/119+14690168..1469212060S ribosomal protein L34, putative, expressed
LOC_Os09g24690Os.11043.2.S1_at9/119+14690168..1469212060S ribosomal protein L34, putative, expressed
LOC_Os09g24700Os.5722.1.S1_at11/119+14693433..14698067expressed protein
LOC_Os09g24700Os.5722.2.S1_at11/119+14693433..14698067expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16405.1.S1_at--700--10571Chr09:14674719..14674743 (25 bp)
TTCTATTGCGTGCTGCTGGATTTCT
LOC_Os09g24650
Os.16405.1.S1_at--702--1111Chr09:14674771..14674795 (25 bp)
AGTGAGTATCTTGCAGCGCCGCAGA
LOC_Os09g24650
Os.16405.1.S1_at--406--8291Chr09:14675226..14675250 (25 bp)
GGCATTCATTCTTCAGTCTGGGCAA
LOC_Os09g24650
Os.16405.1.S1_at--933--8131Chr09:14675251..14675275 (25 bp)
GGAACCGGAGTGCATTTCACCATTG
LOC_Os09g24650
Os.16405.1.S1_at--1125--5091Chr09:14675301..14675325 (25 bp)
GCACGAGCCACAGCCTTGAAGGAGT
LOC_Os09g24650
Os.16405.1.S1_at--558--4791Chr09:14675352..14675376 (25 bp)
GCTCGAATCGCCCAAGGCTAGAATT
LOC_Os09g24650
Os.16405.1.S1_at--135--10031Chr09:14675370..14675394 (25 bp)
TAGAATTCATCGACGGCTGCTGCTA
LOC_Os09g24650
Os.16405.1.S1_at--178--4591Chr09:14675469..14675493 (25 bp)
GCGCATTTGGTTTGGTGTCTCTCTC
LOC_Os09g24650
Os.16405.1.S1_at--157--10671Chr09:14675601..14675625 (25 bp)
TTCCAAGATGGAACGGGCACTCTAC
LOC_Os09g24650
Os.16405.1.S1_at--243--3331Chr09:14675618..14675642 (25 bp)
CACTCTACAAGTGCAGTTTCTTCTC
LOC_Os09g24650
Os.16405.1.S1_at--54--10811Chr09:14675654..14675678 (25 bp)
TTGTCTACTTGCTCATGTCATCTGA
LOC_Os09g24650
Target Sequence 
TTCTATTGCGTGCTGCTGGATTTCTGCTACCATTCTATATAATGNNTTGGGCAGTGAGTATCTTGCAGCGCCGCAGACAG
CGACAGGAGGCGGCTGCCTTAGCAGCAACTGAGGTGGCATTCATTCTTCAGTCTGGGCAAGGAACCGGAGTGCATTTCAC
CATTGCACCGGATTCGCCGACCACACCNGCAGCACGAGCCACAGCCTTGAAGGAGTGGCTTGGTCGGCTGCAGCCGGGCA
GTGCTCGAATCGCCCAAGGCTAGAATTCATCGACGGCTGCTGCTACTGTCAAGTGCAGAAACCACAGATACATTTGTTCG
CGNGTGTGTGCNNCAGTGTACTAGTAGTAGAGAGTGTAAAGGCGCATTTGGTTTGGTGTCTCTCTCCCAGTTTGCGCTCC
GGATTTCGCTTGTGCGTTTTGCTTGTCGGCCCGGGAGTAACGTGGTGTGTATATAAAGCAACAACGCTACTTTGATTAAG
TGTTCTGTAATTGTTCCAAGATGGAACGGGCACTCTACAAGTGCAGTTTCTTCTCTGCCCATCTCGTTGTCTACTTGCTC
ATGTCATCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16405.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis