Browse Element(s) Details


OsAffx.17878.1.S1_at

Description tigr:9637.m02113
TID=OsAffx.17878.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g246306/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24590OsAffx.17880.1.S1_x_at1/119+14648796..14649157expressed protein
LOC_Os09g24600OsAffx.17877.1.S1_x_at11/119+14651111..14651560adenosylmethionine decarboxylase family protein, putative
LOC_Os09g24610OsAffx.30004.2.S1_at11/119+14653564..14654280expressed protein
LOC_Os09g24620Os.22832.1.S1_at11/119+14658941..14660267expressed protein
LOC_Os09g24630OsAffx.17878.1.S1_at6/119+14660674..14663151hypothetical protein
LOC_Os09g24640Os.8268.1.S1_at11/119+14665246..14666808pentatricopeptide, putative, expressed
LOC_Os09g24650Os.16405.1.S1_at11/119+14670645..14675767Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g24660Os.47978.1.A1_at11/119+14676524..14680075zinc finger motif, C2HC5-type family protein, expressed
LOC_Os09g24670Os.5442.1.S1_at11/119+14680406..14686126CAAX amino terminal protease family protein
LOC_Os09g24670OsAffx.17879.1.S1_at11/119+14680406..14686126CAAX amino terminal protease family protein
LOC_Os09g24680OsAffx.6387.1.S1_at11/119+14686747..14689179pentatricopeptide, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17878.1.S1_at--914--3972Chr04:17328783..17328809 (23 bp)
CGGGTCTCCTCAAGCGATGGCGGCA
NONE
OsAffx.17878.1.S1_at--536--10511Chr09:14664599..14664623 (25 bp)
TTCAAGCCCATGACTTCCTCGGCAA
NONE
OsAffx.17878.1.S1_at--1106--8611Chr09:14664507..14664531 (25 bp)
TGGTGTGGACACTGCTCACTCTCCT
NONE
OsAffx.17878.1.S1_at--29--5291Chr09:14664445..14664467 (23 bp)
GAAGGCCCTTCAAAGCTTGTTTGCC
NONE
OsAffx.17878.1.S1_at--611--3611NONE
CTTGTTTGCCAAAAGCGTCCAGCTG
NONE
OsAffx.17878.1.S1_at--1037--2351Chr09:14662202..14662226 (25 bp)
AAAGCGTCCAGCTGCGGATGCTGTT
LOC_Os09g24630
OsAffx.17878.1.S1_at--514--5451Chr09:14660932..14660956 (25 bp)
GAACGGCGAGCCATCTTGTGCCGAC
LOC_Os09g24630
OsAffx.17878.1.S1_at--378--8992Chr09:14660824..14660848 (25 bp)
TGAAGCTACCTTGGCCAAACAAGAA
LOC_Os09g24630
OsAffx.17878.1.S1_at--159--1431Chr09:14660755..14660779 (25 bp)
AGAACACCGTTCTTCTGTGTTGGTC
LOC_Os09g24630
OsAffx.17878.1.S1_at--931--6731Chr09:14660747..14660771 (25 bp)
GTTCTTCTGTGTTGGTCACCAGAGA
LOC_Os09g24630
OsAffx.17878.1.S1_at--444--1251Chr09:14660720..14660744 (25 bp)
AGTTGGACGGCCGACATAACCTCTT
LOC_Os09g24630
Target Sequence 
CGGGTCTCCTCAAGCGATGGCGGCAGGGGCTCCTCTCTCTCTCTCTTCCTCTCGTTCCCTTCAAGCCCATGACTTCCTCG
GCAAGCTCCTCCAGCCACCAGCCCTCGACGGGCACGGCAGCGGTCTCAATGGGTGGACTCGGCGGAGGGTGTGGTGTGGA
CACTGCTCACTCTCCTCCAGCGGACGGGGATTGTGGCGGCGAGCGGGGTGGAATTGAAGGCCCTTCAAAGCTTGTTTGCC
AAAAGCGTCCAGCTGCGGATGCTGTTGCGGAGTGGTGCGAGCTAGCTGCTGCCAGCGTGCTCGCCGGCCGGAACGGCGAG
CCATCTTGTGCCGACGTCGATGGGGAGGATGATTCCATGGCGAGCTGCAAAGGAGAGAGCCGAGGAGCAAACCCAGTCGG
GGCCTCCGCAGTGGAGGTTGAAGCTACCTTGGCCAAACAAGAAAACCACAGCTGCCCCCAGAAGACGAAAAACCGAATAC
CAAGGAAAGAACACCGTTCTTCTGTGTTGGTCACCAGAGAAAAGTTGGACGGCCGACATAACCTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17878.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis