Browse Element(s) Details


Os.8268.1.S1_at

Description gb:AK102254.1
DB_XREF= gi:32987463
TID=Os.8268.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8268 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033111M02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033088H22, full insert sequence.
FL= gb:AK102254.1 gb:AK102867.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2464011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24590OsAffx.17880.1.S1_x_at1/119+14648796..14649157expressed protein
LOC_Os09g24600OsAffx.17877.1.S1_x_at11/119+14651111..14651560adenosylmethionine decarboxylase family protein, putative
LOC_Os09g24610OsAffx.30004.2.S1_at11/119+14653564..14654280expressed protein
LOC_Os09g24620Os.22832.1.S1_at11/119+14658941..14660267expressed protein
LOC_Os09g24630OsAffx.17878.1.S1_at6/119+14660674..14663151hypothetical protein
LOC_Os09g24640Os.8268.1.S1_at11/119+14665246..14666808pentatricopeptide, putative, expressed
LOC_Os09g24650Os.16405.1.S1_at11/119+14670645..14675767Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g24660Os.47978.1.A1_at11/119+14676524..14680075zinc finger motif, C2HC5-type family protein, expressed
LOC_Os09g24670Os.5442.1.S1_at11/119+14680406..14686126CAAX amino terminal protease family protein
LOC_Os09g24670OsAffx.17879.1.S1_at11/119+14680406..14686126CAAX amino terminal protease family protein
LOC_Os09g24680OsAffx.6387.1.S1_at11/119+14686747..14689179pentatricopeptide, putative
LOC_Os09g24690Os.11043.1.S1_x_at11/119+14690168..1469212060S ribosomal protein L34, putative, expressed
LOC_Os09g24690Os.11043.2.S1_at9/119+14690168..1469212060S ribosomal protein L34, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8268.1.S1_at--23--8611Chr09:14666210..14666234 (25 bp)
TGGTCTGCTTTGTGCATGTAGCCAT
LOC_Os09g24640
Os.8268.1.S1_at--541--7891Chr09:14666260..14666284 (25 bp)
GGTTCTTCCACGAAATGCAGCATGT
LOC_Os09g24640
Os.8268.1.S1_at--670--6291Chr09:14666300..14666324 (25 bp)
GATGATGACGCACTACAGCGCCATG
LOC_Os09g24640
Os.8268.1.S1_at--988--4331Chr09:14666320..14666344 (25 bp)
CCATGGTTGATGTCCTAGGCCGCAA
LOC_Os09g24640
Os.8268.1.S1_at--1100--5251Chr09:14666380..14666404 (25 bp)
GAATGCCAGTCGAGGCTGACCCAGT
LOC_Os09g24640
Os.8268.1.S1_at--492--8011Chr09:14666410..14666434 (25 bp)
GGAGGACATTATTGGCAGCCTGCCA
LOC_Os09g24640
Os.8268.1.S1_at--798--3391Chr09:14666433..14666457 (25 bp)
CAGCTGCATAGCTCCAAGGACTGTA
LOC_Os09g24640
Os.8268.1.S1_at--55--1631Chr09:14666511..14666535 (25 bp)
AGCGGGAACTACGTCATGGTTTCAA
LOC_Os09g24640
Os.8268.1.S1_at--953--951Chr09:14666642..14666666 (25 bp)
AGGACGGGTGCATCGGTTCATCTTC
LOC_Os09g24640
Os.8268.1.S1_at--1082--7651Chr09:14666668..14666692 (25 bp)
GGGATGATTCTTGCCCTGAATTTCA
LOC_Os09g24640
Os.8268.1.S1_at--822--2271Chr09:14666736..14666760 (25 bp)
AAATGTGAACCTATTGACCCAATCT
LOC_Os09g24640
Target Sequence 
TGGTCTGCTTTGTGCATGTAGCCATGCTGGCCTGGTTGATGAGGGGCGCCGGTTCTTCCACGAAATGCAGCATGTTTATG
GTATTGTGCCGATGATGACGCACTACAGCGCCATGGTTGATGTCCTAGGCCGCAACGGTCTTCTCCAGGAAGCTTATGAC
TTTGTTGTAGGAATGCCAGTCGAGGCTGACCCAGTTGTGTGGAGGACATTATTGGCAGCCTGCCAGCTGCATAGCTCCAA
GGACTGTATTGAGATCATTGACAAGGTGCAGGGCAAACTGCTGGAGCTAGAGCCCCGGAGAAGCGGGAACTACGTCATGG
TTTCAAACATCTACTGCGAAATTGGATCATGGGACGAGGCAGCGAAGGCAAGGAGGGTGATGAGGGAAGGAGGGATGAAG
AAGGTTGCGGGAGAGAGTTGTGTTGAGGTGGGAGGACGGGTGCATCGGTTCATCTTCGGGGATGATTCTTGCCCTGAATT
TCATGGGGCTTGTAGGATTCTCCATGAATTGAATCTCAACATGAGAAAATGTGAACCTATTGACCCAATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8268.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis