Browse Element(s) Details


Os.5442.1.S1_at

Description gb:AK069925.1
DB_XREF= gi:32979949
TID=Os.5442.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5442 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023036B16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023036B16, full insert sequence.
FL= gb:AK069925.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2467011/11CAAX amino terminal protease family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24620Os.22832.1.S1_at11/119+14658941..14660267expressed protein
LOC_Os09g24630OsAffx.17878.1.S1_at6/119+14660674..14663151hypothetical protein
LOC_Os09g24640Os.8268.1.S1_at11/119+14665246..14666808pentatricopeptide, putative, expressed
LOC_Os09g24650Os.16405.1.S1_at11/119+14670645..14675767Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g24660Os.47978.1.A1_at11/119+14676524..14680075zinc finger motif, C2HC5-type family protein, expressed
LOC_Os09g24670Os.5442.1.S1_at11/119+14680406..14686126CAAX amino terminal protease family protein
LOC_Os09g24670OsAffx.17879.1.S1_at11/119+14680406..14686126CAAX amino terminal protease family protein
LOC_Os09g24680OsAffx.6387.1.S1_at11/119+14686747..14689179pentatricopeptide, putative
LOC_Os09g24690Os.11043.1.S1_x_at11/119+14690168..1469212060S ribosomal protein L34, putative, expressed
LOC_Os09g24690Os.11043.2.S1_at9/119+14690168..1469212060S ribosomal protein L34, putative, expressed
LOC_Os09g24700Os.5722.1.S1_at11/119+14693433..14698067expressed protein
LOC_Os09g24700Os.5722.2.S1_at11/119+14693433..14698067expressed protein
LOC_Os09g24710Os.38084.2.S1_x_at11/119+14710642..14715764hydrolase, alpha/beta fold family protein, expressed
LOC_Os09g24710Os.38084.1.S1_at10/119+14710642..14715764hydrolase, alpha/beta fold family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0007275biological_processdevelopment
GO:0003700molecular_functiontranscription factor activity
GO:0008487molecular_functionprenyl-dependent CAAX protease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5442.1.S1_at--1018--10471Chr09:14683021..14683268 (25 bp)
TTAACCTTTCTTCAGCTGCAAGGGT
LOC_Os09g24670
Os.5442.1.S1_at--319--5911Chr09:14683280..14683304 (25 bp)
GAGCTTTTGGGAGCATCTTGAAGGC
LOC_Os09g24670
Os.5442.1.S1_at--393--5931Chr09:14683290..14683314 (25 bp)
GAGCATCTTGAAGGCTTTGACTGAT
LOC_Os09g24670
Os.5442.1.S1_at--1116--4871Chr09:14683303..14683327 (25 bp)
GCTTTGACTGATCAGCCTACGGCTT
LOC_Os09g24670
Os.5442.1.S1_at--65--1691Chr09:14683316..14683340 (25 bp)
AGCCTACGGCTTTGTGCATATGCTT
LOC_Os09g24670
Os.5442.1.S1_at--719--7331Chr09:14683329..14683353 (25 bp)
GTGCATATGCTTTAGTAACTTGATC
LOC_Os09g24670
Os.5442.1.S1_at--1031--3191Chr09:14683372..14683396 (25 bp)
CAATGGGTTCTCCTTTATTTTACTG
LOC_Os09g24670
Os.5442.1.S1_at--191--10591Chr09:14683379..14683403 (25 bp)
TTCTCCTTTATTTTACTGTTCTCTG
LOC_Os09g24670
Os.5442.1.S1_at--299--6731Chr09:14683396..14683420 (25 bp)
GTTCTCTGTAATTTCATGTTTCCCG
LOC_Os09g24670
Os.5442.1.S1_at--348--3511Chr09:14683410..14683434 (25 bp)
CATGTTTCCCGTAACTCCCAGAAGT
LOC_Os09g24670
Os.5442.1.S1_at--958--10831Chr09:14683454..14683478 (25 bp)
TTGTGTTTGTACTCATCTGCAATGA
LOC_Os09g24670
Target Sequence 
TTAACCTTTCTTCAGCTGCAAGGGTATGATATCAAGGAGCTTTTGGGAGCATCTTGAAGGCTTTGACTGATCAGCCTACG
GCTTTGTGCATATGCTTTAGTAACTTGATCAAAGATACTTGAAAAGAACAATGGGTTCTCCTTTATTTTACTGTTCTCTG
TAATTTCATGTTTCCCGTAACTCCCAGAAGTAAATTACGAGCGAAATATATTGTGTTTGTACTCATCTGCAATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5442.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis