Browse Element(s) Details


Os.47978.1.A1_at

Description gb:AK062649.1
DB_XREF= gi:32972667
TID=Os.47978.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47978 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-105-E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-105-E05, full insert sequence.
FL= gb:AK062649.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2466011/11zinc finger motif, C2HC5-type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24600OsAffx.17877.1.S1_x_at11/119+14651111..14651560adenosylmethionine decarboxylase family protein, putative
LOC_Os09g24610OsAffx.30004.2.S1_at11/119+14653564..14654280expressed protein
LOC_Os09g24620Os.22832.1.S1_at11/119+14658941..14660267expressed protein
LOC_Os09g24630OsAffx.17878.1.S1_at6/119+14660674..14663151hypothetical protein
LOC_Os09g24640Os.8268.1.S1_at11/119+14665246..14666808pentatricopeptide, putative, expressed
LOC_Os09g24650Os.16405.1.S1_at11/119+14670645..14675767Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g24660Os.47978.1.A1_at11/119+14676524..14680075zinc finger motif, C2HC5-type family protein, expressed
LOC_Os09g24670Os.5442.1.S1_at11/119+14680406..14686126CAAX amino terminal protease family protein
LOC_Os09g24670OsAffx.17879.1.S1_at11/119+14680406..14686126CAAX amino terminal protease family protein
LOC_Os09g24680OsAffx.6387.1.S1_at11/119+14686747..14689179pentatricopeptide, putative
LOC_Os09g24690Os.11043.1.S1_x_at11/119+14690168..1469212060S ribosomal protein L34, putative, expressed
LOC_Os09g24690Os.11043.2.S1_at9/119+14690168..1469212060S ribosomal protein L34, putative, expressed
LOC_Os09g24700Os.5722.1.S1_at11/119+14693433..14698067expressed protein
LOC_Os09g24700Os.5722.2.S1_at11/119+14693433..14698067expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47978.1.A1_at--863--5851Chr09:14677082..14677106 (25 bp)
GAGCCACCGTGTTGGAATCCGAGCA
LOC_Os09g24660
Os.47978.1.A1_at--304--7951Chr09:14677055..14677079 (25 bp)
GGATCTTGGGACCACCTGAAGAGAA
LOC_Os09g24660
Os.47978.1.A1_at--161--1011Chr09:14677031..14677055 (25 bp)
AGGATCAGATCCACCGCATACAAGC
LOC_Os09g24660
Os.47978.1.A1_at--735--1351Chr09:14676993..14677017 (25 bp)
AGAGAGCAGCCCGTGTTCATCGAAA
LOC_Os09g24660
Os.47978.1.A1_at--627--2731Chr09:14676915..14676939 (25 bp)
AAGAATGGCCTGTGCCTGGAGGTAA
LOC_Os09g24660
Os.47978.1.A1_at--84--431Chr09:14676824..14676848 (25 bp)
ATCATCTGGCGTACAGTTCTTTCGG
LOC_Os09g24660
Os.47978.1.A1_at--1020--4051Chr09:14676722..14676746 (25 bp)
CGATGGGTGCCTTCCATTGTAGGTA
LOC_Os09g24660
Os.47978.1.A1_at--661--31Chr09:14676707..14676731 (25 bp)
ATTGTAGGTATGTCATCCCCGATTT
LOC_Os09g24660
Os.47978.1.A1_at--523--9291Chr09:14676692..14676716 (25 bp)
TCCCCGATTTTGGTTCATACTGGTT
LOC_Os09g24660
Os.47978.1.A1_at--1086--6051Chr09:14676664..14676688 (25 bp)
GAGTTCTCAGCTTTTACCCAGAGGA
LOC_Os09g24660
Os.47978.1.A1_at--17--3571Chr09:14676588..14676612 (25 bp)
CATATATACCCATCTCCTTTTTTGT
LOC_Os09g24660
Target Sequence 
GAGCCACCGTGTTGGAATCCGAGCACCGGATCTTGGGACCACCTGAAGAGAAGGATCAGATCCACCGCATACAAGCCAAC
CCCACAATCAGAGAGCAGCCCGTGTTCATCGAAACAGGGCCAGTGAAGCCAAAAACTGACAGAGCTCGACAGAGCAAGAG
ACTCNCCAAGAATGGCCTGTGCCTGGAGGTAACTGGGAGGCTGCAGCACGATGACAAGGACCCCCAGAGCTTCCTGGGTG
GCAAGANGAAGAAGGGTGATCATCTGGCGTACAGTTCTTTCGGCCAACCCCGTGAAGGGGACGACTTCGACTGCTCCCNA
GATTTTGATTGAGCCTAATTTGCTTGTGGATGNTGATGGTCGATGGGTGCCTTCCATTGTAGGTATGTCATCCCCGATTT
TGGTTCATACTGGTTGTTGAGTTCTCAGCTTTTACCCAGAGGAGGCAAAATACAGACCAGGCTGTAGAAATGCTATCATA
CACATGAACACATCCATATATACCCATCTCCTTTTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47978.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis