Browse Element(s) Details


OsAffx.17877.1.S1_x_at

Description tigr:9637.m02110
TID=OsAffx.17877.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2460011/11adenosylmethionine decarboxylase family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24570Os.52370.1.S1_at11/119+14628692..14631858PsRT17-1 like protein, putative, expressed
LOC_Os09g24580Os.10126.1.S1_at4/119+14634599..14635120EF hand family protein, expressed
LOC_Os09g24590OsAffx.17880.1.S1_x_at1/119+14648796..14649157expressed protein
LOC_Os09g24600OsAffx.17877.1.S1_x_at11/119+14651111..14651560adenosylmethionine decarboxylase family protein, putative
LOC_Os09g24610OsAffx.30004.2.S1_at11/119+14653564..14654280expressed protein
LOC_Os09g24620Os.22832.1.S1_at11/119+14658941..14660267expressed protein
LOC_Os09g24630OsAffx.17878.1.S1_at6/119+14660674..14663151hypothetical protein
LOC_Os09g24640Os.8268.1.S1_at11/119+14665246..14666808pentatricopeptide, putative, expressed
LOC_Os09g24650Os.16405.1.S1_at11/119+14670645..14675767Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g24660Os.47978.1.A1_at11/119+14676524..14680075zinc finger motif, C2HC5-type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006596biological_processpolyamine biosynthesis
GO:0004014molecular_functionadenosylmethionine decarboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17877.1.S1_x_at--200--5811Chr09:14651469..14651493 (25 bp)
GACGCGGCGCAGTGTGCTGTCGTGT
LOC_Os09g24600
OsAffx.17877.1.S1_x_at--73--5031Chr09:14651461..14651485 (25 bp)
GCAGTGTGCTGTCGTGTCGGCGGCA
LOC_Os09g24600
OsAffx.17877.1.S1_x_at--321--9111Chr09:14651403..14651427 (25 bp)
TGCTGCGCGCGGTGCCCGTACTGCT
LOC_Os09g24600
OsAffx.17877.1.S1_x_at--943--4671Chr09:14651395..14651419 (25 bp)
GCGGTGCCCGTACTGCTGCGTGCCG
LOC_Os09g24600
OsAffx.17877.1.S1_x_at--116--7611Chr09:14651349..14651373 (25 bp)
GGGCACTCCGGCTCCAGTCGTGCAG
LOC_Os09g24600
OsAffx.17877.1.S1_x_at--216--5111Chr09:14651347..14651371 (25 bp)
GCACTCCGGCTCCAGTCGTGCAGGT
LOC_Os09g24600
OsAffx.17877.1.S1_x_at--1064--8311Chr09:14651340..14651364 (25 bp)
GGCTCCAGTCGTGCAGGTACTCCTG
LOC_Os09g24600
OsAffx.17877.1.S1_x_at--994--871Chr09:14651295..14651319 (25 bp)
AGGCGCAACCGTTCCCGCACGCTGA
LOC_Os09g24600
OsAffx.17877.1.S1_x_at--112--5091Chr09:14651279..14651303 (25 bp)
GCACGCTGACTTTGCCGACGAGGTG
LOC_Os09g24600
OsAffx.17877.1.S1_x_at--252--8671Chr09:14651230..14651254 (25 bp)
TGTGAGGTCCTACTCTTCCGCCACT
LOC_Os09g24600
OsAffx.17877.1.S1_x_at--483--7731Chr09:14651163..14651187 (25 bp)
GGTGGCACGTCTACTTGGCATCTTC
LOC_Os09g24600
Target Sequence 
GACGCGGCGCAGTGTGCTGTCGTGTCGGCGGCAGGGAGGTGCTCAAGACGTGCGGCACCACGCCGCTGCTGCGCGCGGTG
CCCGTACTGCTGCGTGCCGCCGCTGCGGGCGGGCTCAGCCGGGCACTCCGGCTCCAGTCGTGCAGGTACTCCTGCGGCGA
GTGCCTGTTCCCGGAGGCGCAACCGTTCCCGCACGCTGACTTTGCCGACGAGGTGGCGTACCTCGACGGCGCCCTCCCCT
GTGAGGTCCTACTCTTCCGCCACTCCGCCGTGATGCCGCCGTCGTCGTCGCCCGGTGCCTCGCACAGGTGGCACGTCTAC
TTGGCATCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17877.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis