Browse Element(s) Details


Os.52370.1.S1_at

Description gb:AK066696.1
DB_XREF= gi:32976714
TID=Os.52370.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52370 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013073D17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013073D17, full insert sequence.
FL= gb:AK066696.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2457011/11PsRT17-1 like protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24510OsAffx.17875.1.S1_at11/119+14601760..14603777hypothetical protein
LOC_Os09g24520Os.57398.1.S1_at11/119+14602950..14606124pentatricopeptide, putative, expressed
LOC_Os09g24530OsAffx.6386.1.S1_at11/119+14606620..14608847Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative, expressed
LOC_Os09g24540Os.12380.1.S1_at11/119+14609815..14612265PPIC-type PPIASE domain containing protein, expressed
LOC_Os09g24550OsAffx.17876.1.S1_at11/119+14615985..14616249hypothetical protein
LOC_Os09g24560OsAffx.30003.1.S1_s_at11/119+14616938..14618006No apical meristem protein
LOC_Os09g24560OsAffx.13887.1.S1_at1/119+14616938..14618006No apical meristem protein
LOC_Os09g24570Os.52370.1.S1_at11/119+14628692..14631858PsRT17-1 like protein, putative, expressed
LOC_Os09g24580Os.10126.1.S1_at4/119+14634599..14635120EF hand family protein, expressed
LOC_Os09g24590OsAffx.17880.1.S1_x_at1/119+14648796..14649157expressed protein
LOC_Os09g24600OsAffx.17877.1.S1_x_at11/119+14651111..14651560adenosylmethionine decarboxylase family protein, putative
LOC_Os09g24610OsAffx.30004.2.S1_at11/119+14653564..14654280expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52370.1.S1_at--75--10131Chr09:14629258..14629362 (25 bp)
TATGCACAACGCACTGATGGCTCAC
LOC_Os09g24570
Os.52370.1.S1_at--1--6231Chr09:14629243..14629267 (25 bp)
GATGGCTCACCGTACCTTTGAGAAT
LOC_Os09g24570
Os.52370.1.S1_at--442--2391Chr09:14629201..14629225 (25 bp)
AAACATGGCATTGCTTGGGCGCATC
LOC_Os09g24570
Os.52370.1.S1_at--994--3051Chr09:14629079..14629103 (25 bp)
AATCTATTTATACTTACCCTGCTCC
LOC_Os09g24570
Os.52370.1.S1_at--597--4751Chr09:14628987..14629011 (25 bp)
GCTGAAGGATTTTTGCTCGGCGACC
LOC_Os09g24570
Os.52370.1.S1_at--178--4811Chr09:14628973..14628997 (25 bp)
GCTCGGCGACCAGTGAATGTTACAA
LOC_Os09g24570
Os.52370.1.S1_at--826--7911Chr09:14628878..14628902 (25 bp)
GGTTGACCCAAGCATTCAGCTGACT
LOC_Os09g24570
Os.52370.1.S1_at--835--2391Chr09:14628835..14628859 (25 bp)
AAAAATTCAGTCTCGTTCCACATTC
LOC_Os09g24570
Os.52370.1.S1_at--1062--10211Chr09:14628769..14628793 (25 bp)
TATTGTATCTTTTTGTCCTTTCCGT
LOC_Os09g24570
Os.52370.1.S1_at--997--3671Chr09:14628752..14628776 (25 bp)
CTTTCCGTACTACATTCTGTGCATA
LOC_Os09g24570
Os.52370.1.S1_at--561--6411Chr09:14628713..14628737 (25 bp)
GATCTTTCGGCCGTGAACTTGTAAG
LOC_Os09g24570
Target Sequence 
TATGCACAACGCACTGATGGCTCACCGTACCTTTGAGAATATGAAGACCATAAGGCCAAACATGGCATTGCTTGGGCGCA
TCTTTGTTAACAAGAGCATGGAGTGGTTGGAATTTCAGGAGGCTGTACAAGCAGGGCACAAGGGTAGATACGGGCAAATC
AGACTGAGGAAACCAAAGCAATCTATTTATACTTACCCTGCTCCAGACTGTATGTGTCAAGGGTAGACTGCTAAATTTTG
CAACAAAAGACTAGATTCTTTAGTGTGTGAAGCTGAAGGATTTTTGCTCGGCGACCAGTGAATGTTACAATGAGGTTCTA
ATTGTTGTCAGTTTCTTAGGACGACAAGGTTCTTTGGATATAGGGTTGGGAAGAAGTTTTGGTTGACCCAAGCATTCAGC
TGACTTAATTTTTACCCTAGAAAAAAAATTCAGTCTCGTTCCACATTCAGTGTAAAGGTTGTAGTTTCGTGAGTGATGTA
GACTTGGCATATTGTATCTTTTTGTCCTTTCCGTACTACATTCTGTGCATATGTAAGTAAACATGGATCTTTCGGCCGTG
AACTTGTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52370.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis