Browse Element(s) Details


OsAffx.17876.1.S1_at

Description tigr:9637.m02105
TID=OsAffx.17876.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2455011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24500OsAffx.30002.1.S1_at11/119+14598025..14599146hypothetical protein
LOC_Os09g24510OsAffx.17875.1.S1_at11/119+14601760..14603777hypothetical protein
LOC_Os09g24520Os.57398.1.S1_at11/119+14602950..14606124pentatricopeptide, putative, expressed
LOC_Os09g24530OsAffx.6386.1.S1_at11/119+14606620..14608847Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative, expressed
LOC_Os09g24540Os.12380.1.S1_at11/119+14609815..14612265PPIC-type PPIASE domain containing protein, expressed
LOC_Os09g24550OsAffx.17876.1.S1_at11/119+14615985..14616249hypothetical protein
LOC_Os09g24560OsAffx.30003.1.S1_s_at11/119+14616938..14618006No apical meristem protein
LOC_Os09g24560OsAffx.13887.1.S1_at1/119+14616938..14618006No apical meristem protein
LOC_Os09g24570Os.52370.1.S1_at11/119+14628692..14631858PsRT17-1 like protein, putative, expressed
LOC_Os09g24580Os.10126.1.S1_at4/119+14634599..14635120EF hand family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17876.1.S1_at--641--6131Chr09:14616018..14616042 (25 bp)
GAGGGCAACGGCTGTGGCCCCCTCG
LOC_Os09g24550
OsAffx.17876.1.S1_at--148--9351Chr09:14616040..14616134 (25 bp)
TCGCAGATCCGATGCGGCAACAACA
LOC_Os09g24550
OsAffx.17876.1.S1_at--356--6371Chr09:14616045..14616139 (25 bp)
GATCCGATGCGGCAACAACACTCCC
LOC_Os09g24550
OsAffx.17876.1.S1_at--68--9511Chr09:14616146..14616170 (25 bp)
TCTCCTGCACAGATCTAGCAGCGGG
LOC_Os09g24550
OsAffx.17876.1.S1_at--690--9271Chr09:14616148..14616172 (25 bp)
TCCTGCACAGATCTAGCAGCGGGCA
LOC_Os09g24550
OsAffx.17876.1.S1_at--431--9031Chr09:14616151..14616175 (25 bp)
TGCACAGATCTAGCAGCGGGCAGCG
LOC_Os09g24550
OsAffx.17876.1.S1_at--702--3311Chr09:14616153..14616177 (25 bp)
CACAGATCTAGCAGCGGGCAGCGAC
LOC_Os09g24550
OsAffx.17876.1.S1_at--1006--2131Chr09:14616154..14616178 (25 bp)
ACAGATCTAGCAGCGGGCAGCGACG
LOC_Os09g24550
OsAffx.17876.1.S1_at--745--1271Chr09:14616156..14616180 (25 bp)
AGATCTAGCAGCGGGCAGCGACGTC
LOC_Os09g24550
OsAffx.17876.1.S1_at--327--10011Chr09:14616186..14616210 (25 bp)
TAGGATGGACTATGGCGAGTACCAC
LOC_Os09g24550
OsAffx.17876.1.S1_at--31--851Chr09:14616190..14616214 (25 bp)
ATGGACTATGGCGAGTACCACGACG
LOC_Os09g24550
Target Sequence 
GAGGGCAACGGCTGTGGCCCCCTCGCAGATCCGATGCGGCAACAACACTCCCCCGCCCTCTCCTGCACAGATCTAGCAGC
GGGCAGCGACGTCGGCGGTAGGATGGACTATGGCGAGTACCACGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17876.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis