Browse Element(s) Details


Os.12380.1.S1_at

Description gb:AK058290.1
DB_XREF= gi:32968308
TID=Os.12380.1
CNT=26
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12380 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-047-F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-013-E07, full insert sequence.
FL= gb:AK058290.1 gb:AK121091.1 gb:AK104919.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2454011/11PPIC-type PPIASE domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24490NANA9+14582905..14585280Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os09g24500OsAffx.30002.1.S1_at11/119+14598025..14599146hypothetical protein
LOC_Os09g24510OsAffx.17875.1.S1_at11/119+14601760..14603777hypothetical protein
LOC_Os09g24520Os.57398.1.S1_at11/119+14602950..14606124pentatricopeptide, putative, expressed
LOC_Os09g24530OsAffx.6386.1.S1_at11/119+14606620..14608847Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative, expressed
LOC_Os09g24540Os.12380.1.S1_at11/119+14609815..14612265PPIC-type PPIASE domain containing protein, expressed
LOC_Os09g24550OsAffx.17876.1.S1_at11/119+14615985..14616249hypothetical protein
LOC_Os09g24560OsAffx.30003.1.S1_s_at11/119+14616938..14618006No apical meristem protein
LOC_Os09g24560OsAffx.13887.1.S1_at1/119+14616938..14618006No apical meristem protein
LOC_Os09g24570Os.52370.1.S1_at11/119+14628692..14631858PsRT17-1 like protein, putative, expressed
LOC_Os09g24580Os.10126.1.S1_at4/119+14634599..14635120EF hand family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016853molecular_functionisomerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12380.1.S1_at--777--6411Chr09:14610547..14610571 (25 bp)
GATCTTGGATGGTTCCCGCGTGGAA
LOC_Os09g24540
Os.12380.1.S1_at--395--6291Chr09:14610502..14610526 (25 bp)
GATGTTGCATTTAGCACACCTGTGG
LOC_Os09g24540
Os.12380.1.S1_at--318--5911Chr09:14610477..14610501 (25 bp)
GAGCTACTAGCGCACCATTTAAGTC
LOC_Os09g24540
Os.12380.1.S1_at--626--2831Chr09:14610184..14610481 (25 bp)
AAGTCAACGCATGGGTACCACTTCA
LOC_Os09g24540
Os.12380.1.S1_at--847--6431Chr09:14610135..14610159 (25 bp)
GATCAGTCTGCTTCAGGTTGGAACA
LOC_Os09g24540
Os.12380.1.S1_at--891--6611Chr09:14610119..14610143 (25 bp)
GTTGGAACAGAAGCACCTCAGTCTA
LOC_Os09g24540
Os.12380.1.S1_at--1152--4431Chr09:14610080..14610104 (25 bp)
GCCTCGTGTCTCTGTCAACTTAATA
LOC_Os09g24540
Os.12380.1.S1_at--1134--671Chr09:14610047..14610071 (25 bp)
ATGACGGGCATCCATATTCTATGTT
LOC_Os09g24540
Os.12380.1.S1_at--116--10471Chr09:14610023..14610047 (25 bp)
TTAGCCTTTCTAATGCTCTCTGAAA
LOC_Os09g24540
Os.12380.1.S1_at--836--4951Chr09:14609920..14609944 (25 bp)
GCATTTGTCTGTGTCTCTTATCTAA
LOC_Os09g24540
Os.12380.1.S1_at--681--3171Chr09:14609864..14609888 (25 bp)
AATTGGATGGTTCCTCCTCTTACGA
LOC_Os09g24540
Target Sequence 
GATCTTGGATGGTTCCCGCGTGGAAAAATGGCTGGCCCTTTTCANGGATGTTGCATTTAGCACACCTGTGGGAGCTACTA
GCGCACCATTTAAGTCAACGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTGCTTCAGGTTG
GAACAGAAGCACCTCAGTCTATACAAGATGCAGATGCCTCGTGTCTCTGTCAACTTAATAAGCACTGAATGACGGGCATC
CATATTCTATGTTTAGCCTTTCTAATGCTCTCTGAAAGAGTCTTGAAAAACTGTGCTTTCTGTAAGTAACCTGTGGTGTC
AAGCATGACATCTATTTGGGATATGCTGAGATTTAGCATTTGTCTGTGTCTCTTATCTAATTGGCATCTTGTTAGCTATT
GTTATGTCTCTAATTGGATGGTTCCTCCTCTTACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12380.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis