Browse Element(s) Details


OsAffx.30003.1.S1_s_at

Description tigr:9637.m02106
TID=OsAffx.30003.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=No apical meristem (NAM) protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2456011/11No apical meristem protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24500OsAffx.30002.1.S1_at11/119+14598025..14599146hypothetical protein
LOC_Os09g24510OsAffx.17875.1.S1_at11/119+14601760..14603777hypothetical protein
LOC_Os09g24520Os.57398.1.S1_at11/119+14602950..14606124pentatricopeptide, putative, expressed
LOC_Os09g24530OsAffx.6386.1.S1_at11/119+14606620..14608847Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative, expressed
LOC_Os09g24540Os.12380.1.S1_at11/119+14609815..14612265PPIC-type PPIASE domain containing protein, expressed
LOC_Os09g24550OsAffx.17876.1.S1_at11/119+14615985..14616249hypothetical protein
LOC_Os09g24560OsAffx.30003.1.S1_s_at11/119+14616938..14618006No apical meristem protein
LOC_Os09g24560OsAffx.13887.1.S1_at1/119+14616938..14618006No apical meristem protein
LOC_Os09g24570Os.52370.1.S1_at11/119+14628692..14631858PsRT17-1 like protein, putative, expressed
LOC_Os09g24580Os.10126.1.S1_at4/119+14634599..14635120EF hand family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0010014biological_processmeristem initiation
GO:0010199biological_processorgan boundary specification
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30003.1.S1_s_at--720--8771Chr09:14617230..14617254 (25 bp)
TGATTTGCAGGGTGTTCGTCAGGAA
LOC_Os09g24560
OsAffx.30003.1.S1_s_at--670--7751Chr09:14617220..14617244 (25 bp)
GGTGTTCGTCAGGAAGACACCAGAT
LOC_Os09g24560
OsAffx.30003.1.S1_s_at--264--2151Chr09:14617204..14617228 (25 bp)
ACACCAGATGGTAACAACGATAGGG
LOC_Os09g24560
OsAffx.30003.1.S1_s_at--1002--5471Chr09:14617179..14617203 (25 bp)
GAACTACAGAACATCATCTTCCCTC
LOC_Os09g24560
OsAffx.30003.1.S1_s_at--503--4111Chr09:14617119..14617143 (25 bp)
CGAACTCTGTGGACGGCGCAGGCCA
LOC_Os09g24560
OsAffx.30003.1.S1_s_at--267--891Chr09:14617100..14617124 (25 bp)
AGGCCATGCGAGCTGCAGCTTCTTC
LOC_Os09g24560
OsAffx.30003.1.S1_s_at--348--10551Chr09:14617081..14617105 (25 bp)
TTCTTCTCCGGTGCTAATGAGTCCA
LOC_Os09g24560
OsAffx.30003.1.S1_s_at--577--7311Chr09:14617071..14617095 (25 bp)
GTGCTAATGAGTCCATGGCGCCAAG
LOC_Os09g24560
OsAffx.30003.1.S1_s_at--510--4551Chr09:14617054..14617078 (25 bp)
GCGCCAAGCGACCATTTCAACATAG
LOC_Os09g24560
OsAffx.30003.1.S1_s_at--1081--6051Chr09:14616994..14617018 (25 bp)
GAGTTGCTGATGATGAACTGTTCTT
LOC_Os09g24560
OsAffx.30003.1.S1_s_at--61--10571Chr09:14616974..14616998 (25 bp)
TTCTTCGGCTTTTGATCTGCCAGAG
LOC_Os09g24560
Target Sequence 
TGATTTGCAGGGTGTTCGTCAGGAAGACACCAGATGGTAACAACGATAGGGGAACTACAGAACATCATCTTCCCTCCGAC
GACGCTCATCTCCGTTCGTCGCCGGCGCCGGCGAACTCTGTGGACGGCGCAGGCCATGCGAGCTGCAGCTTCTTCTCCGG
TGCTAATGAGTCCATGGCGCCAAGCGACCATTTCAACATAGGAGACGACATGATCCTCCATGGCCACGACGAGGAGGAGT
TGCTGATGATGAACTGTTCTTCGGCTTTTGATCTGCCAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30003.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis