Browse Element(s) Details


OsAffx.30002.1.S1_at

Description tigr:9637.m02099
TID=OsAffx.30002.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2450011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24490NANA9+14582905..14585280Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os09g24500OsAffx.30002.1.S1_at11/119+14598025..14599146hypothetical protein
LOC_Os09g24510OsAffx.17875.1.S1_at11/119+14601760..14603777hypothetical protein
LOC_Os09g24520Os.57398.1.S1_at11/119+14602950..14606124pentatricopeptide, putative, expressed
LOC_Os09g24530OsAffx.6386.1.S1_at11/119+14606620..14608847Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative, expressed
LOC_Os09g24540Os.12380.1.S1_at11/119+14609815..14612265PPIC-type PPIASE domain containing protein, expressed
LOC_Os09g24550OsAffx.17876.1.S1_at11/119+14615985..14616249hypothetical protein
LOC_Os09g24560OsAffx.30003.1.S1_s_at11/119+14616938..14618006No apical meristem protein
LOC_Os09g24560OsAffx.13887.1.S1_at1/119+14616938..14618006No apical meristem protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30002.1.S1_at--310--4531Chr09:14598253..14598277 (25 bp)
GCCGCCTCACTGGAACTTTGGGAGA
LOC_Os09g24500
OsAffx.30002.1.S1_at--785--2511Chr09:14598266..14598290 (25 bp)
AACTTTGGGAGACAGGGATAGATCA
LOC_Os09g24500
OsAffx.30002.1.S1_at--794--5751Chr09:14598304..14598328 (25 bp)
GACGGTGTGCTAATGTTTTCAATCA
LOC_Os09g24500
OsAffx.30002.1.S1_at--816--31Chr09:14598750..14598774 (25 bp)
ATTGTGTGGCAAGATTGAGTCTACT
LOC_Os09g24500
OsAffx.30002.1.S1_at--397--6591Chr09:14598762..14598786 (25 bp)
GATTGAGTCTACTGATCATGCCCTT
LOC_Os09g24500
OsAffx.30002.1.S1_at--235--8851Chr09:14598774..14598798 (25 bp)
TGATCATGCCCTTTTTAAGTGCCCT
LOC_Os09g24500
OsAffx.30002.1.S1_at--1075--3691Chr09:14598782..14598806 (25 bp)
CCCTTTTTAAGTGCCCTCTGGCTGT
LOC_Os09g24500
OsAffx.30002.1.S1_at--159--7471Chr09:14599032..14599052 (21 bp)
GTGTGCGGTGGTGTATCATGCTAAA
LOC_Os09g24500
OsAffx.30002.1.S1_at--149--951Chr09:14599052..14599076 (25 bp)
AGGAAGGAGATCAAGCTGCTATGAA
LOC_Os09g24500
OsAffx.30002.1.S1_at--902--7711Chr09:14599083..14599107 (25 bp)
GGGTGATCTACTGATGGCTAAACTT
LOC_Os09g24500
OsAffx.30002.1.S1_at--669--1951Chr09:14599092..14599116 (25 bp)
ACTGATGGCTAAACTTCAACGGCTG
LOC_Os09g24500
Target Sequence 
GCCGCCTCACTGGAACTTTGGGAGACAGGGATAGATCAATTTGTCGGGGTAGACGGTGTGCTAATGTTTTCAATCAACAA
GTCAAAGCTGATCAAAAGGAAATGGCAAGGAGGGGATGAATTCTGTAAATTGTGTGGCAAGATTGAGTCTACTGATCATG
CCCTTTTTAAGTGCCCTCTGGCTGTGTTTACTTGGTGTGTGCGGTGGTGTATCATGCTAAAGGAAGGAGATCAAGCTGCT
ATGAAAGGATGGGGTGATCTACTGATGGCTAAACTTCAACGGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30002.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis