Browse Element(s) Details


Os.10126.1.S1_at

Description gb:BI806177
DB_XREF= gi:15853381
DB_XREF=S058G03
CLONE=S058G03
TID=Os.10126.1
CNT=7
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.10126 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_189542.1 (A.thaliana) unknown protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g245804/11EF hand family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24540Os.12380.1.S1_at11/119+14609815..14612265PPIC-type PPIASE domain containing protein, expressed
LOC_Os09g24550OsAffx.17876.1.S1_at11/119+14615985..14616249hypothetical protein
LOC_Os09g24560OsAffx.30003.1.S1_s_at11/119+14616938..14618006No apical meristem protein
LOC_Os09g24560OsAffx.13887.1.S1_at1/119+14616938..14618006No apical meristem protein
LOC_Os09g24570Os.52370.1.S1_at11/119+14628692..14631858PsRT17-1 like protein, putative, expressed
LOC_Os09g24580Os.10126.1.S1_at4/119+14634599..14635120EF hand family protein, expressed
LOC_Os09g24590OsAffx.17880.1.S1_x_at1/119+14648796..14649157expressed protein
LOC_Os09g24600OsAffx.17877.1.S1_x_at11/119+14651111..14651560adenosylmethionine decarboxylase family protein, putative
LOC_Os09g24610OsAffx.30004.2.S1_at11/119+14653564..14654280expressed protein
LOC_Os09g24620Os.22832.1.S1_at11/119+14658941..14660267expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10126.1.S1_at--49--8351Chr09:14634899..14634923 (25 bp)
GGCGGTTGACCTGGACACGGTTCTT
LOC_Os09g24580
Os.10126.1.S1_at--501--4271Chr09:14634890..14634914 (25 bp)
CCTGGACACGGTTCTTGGCCTGATG
LOC_Os09g24580
Os.10126.1.S1_at--724--5531Chr09:14634637..14634661 (25 bp)
GACAAGGACGGCAGGGTCGATTTCC
LOC_Os09g24580
Os.10126.1.S1_at--919--10651Chr09:14634607..14634631 (25 bp)
TTCCTCAAGTTCATGGAGACGGCTG
LOC_Os09g24580
Os.10126.1.S1_at--972--4631Chr09:14634553..14634577 (25 bp)
GCGTCACTTCTCTGCAAATTCTTTG
NONE
Os.10126.1.S1_at--672--9751Chr09:14634505..14634529 (25 bp)
TAATCGACTTCGATCGCTCAGCCGA
NONE
Os.10126.1.S1_at--630--10631Chr09:14634497..14634521 (25 bp)
TTCGATCGCTCAGCCGAATGAAGAA
NONE
Os.10126.1.S1_at--564--5371Chr09:14634478..14634502 (25 bp)
GAAGAACGGCAGCATGTGTATGCTT
NONE
Os.10126.1.S1_at--28--6911Chr09:14634461..14634485 (25 bp)
GTATGCTTATGATCAGTTTAGGTGC
NONE
Os.10126.1.S1_at--563--7311Chr09:14634440..14634464 (25 bp)
GTGCTGTTTGGATCATGGCATTACA
NONE
Os.10126.1.S1_at--16--3271Chr09:14634417..14634441 (25 bp)
CAAAGAGCCAAGAAACGGGTTGTGT
NONE
Target Sequence 
GGCGGTTGACCTGGACACGGTTCTTGGCCTGATGGGCGGCGCGGGNGGCGCCGCGCNGTCGGTGGGGTTCGAGGAGGCGT
CCGCGCTGTTCGANNAGGAGGAGNCCACCNTGGGGGAGGCCGCGGCGGCGTTCCGCGTCTTCGACCGCAACGGCGACGGC
TTCATCGACGCCGGCGAGCTCGGGAGCGTGCTCNGCCTCGCTCGGGTTCGCCNCCGGCGCCGGCCACGCCGAGTGCCAGC
GCATGATCGACGCCTACGACGCGGACAAGGACGGCAGGGTCGATTTCCGCGAGTTCCTCAAGTTCATGGAGACGGCTGCG
GCCTAGGGAATCCACAGGATTCCCANTGGCGTCACTTCTCTGCAAATTCTTTGTTCTTTCGTTCTATTTTTCTCTTTAAT
CGACTTCGATCGCTCAGCCGAATGAAGAACGGCAGCATGTGTATGCTTATGATCAGTTTAGGTGCTGTTTGGATCATGGC
ATTACAAAGAGCCAAGAAACGGGTTGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10126.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis