Browse Element(s) Details


OsAffx.30004.2.S1_at

Description tigr:9637.m02111
TID=OsAffx.30004.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2461011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24570Os.52370.1.S1_at11/119+14628692..14631858PsRT17-1 like protein, putative, expressed
LOC_Os09g24580Os.10126.1.S1_at4/119+14634599..14635120EF hand family protein, expressed
LOC_Os09g24590OsAffx.17880.1.S1_x_at1/119+14648796..14649157expressed protein
LOC_Os09g24600OsAffx.17877.1.S1_x_at11/119+14651111..14651560adenosylmethionine decarboxylase family protein, putative
LOC_Os09g24610OsAffx.30004.2.S1_at11/119+14653564..14654280expressed protein
LOC_Os09g24620Os.22832.1.S1_at11/119+14658941..14660267expressed protein
LOC_Os09g24630OsAffx.17878.1.S1_at6/119+14660674..14663151hypothetical protein
LOC_Os09g24640Os.8268.1.S1_at11/119+14665246..14666808pentatricopeptide, putative, expressed
LOC_Os09g24650Os.16405.1.S1_at11/119+14670645..14675767Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g24660Os.47978.1.A1_at11/119+14676524..14680075zinc finger motif, C2HC5-type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30004.2.S1_at--304--911Chr09:14654121..14654145 (25 bp)
AGGCTGTCCGCCTCAAGTTTGGGTG
LOC_Os09g24610
OsAffx.30004.2.S1_at--450--9671Chr09:14654109..14654133 (25 bp)
TCAAGTTTGGGTGTTTTCGAGGCGA
LOC_Os09g24610
OsAffx.30004.2.S1_at--779--1311Chr09:14654059..14654083 (25 bp)
AGAGGCGTTAGCATTGTTCTCGGCC
LOC_Os09g24610
OsAffx.30004.2.S1_at--615--10451Chr09:14654052..14654076 (25 bp)
TTAGCATTGTTCTCGGCCGTCCCTT
LOC_Os09g24610
OsAffx.30004.2.S1_at--542--8531Chr09:14653837..14653861 (25 bp)
TGGACTGGCTGCTCTCCATCGCAAA
LOC_Os09g24610
OsAffx.30004.2.S1_at--575--531Chr09:14653820..14653844 (25 bp)
ATCGCAAACTCTATCGTCGAGCTGA
LOC_Os09g24610
OsAffx.30004.2.S1_at--346--9551Chr09:14653811..14653835 (25 bp)
TCTATCGTCGAGCTGACGAGATCAC
LOC_Os09g24610
OsAffx.30004.2.S1_at--30--10631Chr09:14653749..14653773 (25 bp)
TTCGAGGTCATAGTGCTGCGCCGTA
LOC_Os09g24610
OsAffx.30004.2.S1_at--615--9111Chr09:14653736..14653760 (25 bp)
TGCTGCGCCGTAGCGACATGTACAT
LOC_Os09g24610
OsAffx.30004.2.S1_at--472--3511Chr09:14653720..14653744 (25 bp)
CATGTACATGAATCTCGTGGAGGCC
LOC_Os09g24610
OsAffx.30004.2.S1_at--1026--9271Chr09:14653647..14653671 (25 bp)
TCCGCCACAGCCGAAGGGAAAAAGA
LOC_Os09g24610
Target Sequence 
AGGCTGTCCGCCTCAAGTTTGGGTGTTTTCGAGGCGAGGAGAGAGGTGGGATGCGACGGCGGAGAGGCGTTAGCATTGTT
CTCGGCCGTCCCTTCCTTCCCGGAAAAAGGAAATGATACGATGATGCGAGGAGAGGGAGAGAGAGAGTGTGAGGTGTGGG
GTAGGGAGAGGGGAACGACAGCGATGTGGCGGCGCCGGAGCTGGTGCAGGGATAGGAGATCGAGCGAGCTGTGGAGGCTA
GAGCCGCTGGCTTTGGCGAGGAAGGCGATGTGGATGCGGGGAGATGGACTGGCTGCTCTCCATCGCAAACTCTATCGTCG
AGCTGACGAGATCACCCTGTCGATCCAAGAGCTCCCCGACGGCGGGGGGCGGTTCGAGGTCATAGTGCTGCGCCGTAGCG
ACATGTACATGAATCTCGTGGAGGCCGTGCCGCCGCCGTTGCTCCAGCACCCGTCGGCCGTCGACCCGCCTGCCTCCGCC
ACAGCCGAAGGGAAAAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30004.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis