Browse Element(s) Details


Os.38084.2.S1_x_at

Description gb:AK061445.1
DB_XREF= gi:32971463
TID=Os.38084.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38084 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002H15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-307-D06, full insert sequence.
FL= gb:AK061445.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2471011/11hydrolase, alpha/beta fold family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24670Os.5442.1.S1_at11/119+14680406..14686126CAAX amino terminal protease family protein
LOC_Os09g24670OsAffx.17879.1.S1_at11/119+14680406..14686126CAAX amino terminal protease family protein
LOC_Os09g24680OsAffx.6387.1.S1_at11/119+14686747..14689179pentatricopeptide, putative
LOC_Os09g24690Os.11043.1.S1_x_at11/119+14690168..1469212060S ribosomal protein L34, putative, expressed
LOC_Os09g24690Os.11043.2.S1_at9/119+14690168..1469212060S ribosomal protein L34, putative, expressed
LOC_Os09g24700Os.5722.1.S1_at11/119+14693433..14698067expressed protein
LOC_Os09g24700Os.5722.2.S1_at11/119+14693433..14698067expressed protein
LOC_Os09g24710Os.38084.2.S1_x_at11/119+14710642..14715764hydrolase, alpha/beta fold family protein, expressed
LOC_Os09g24710Os.38084.1.S1_at10/119+14710642..14715764hydrolase, alpha/beta fold family protein, expressed
LOC_Os09g24720OsAffx.6388.1.A1_x_at9/119+14728630..14730118hypothetical protein
LOC_Os09g24720Os.5353.1.S1_at4/119+14728630..14730118hypothetical protein
LOC_Os09g24730OsAffx.30005.1.S1_at10/119+14730887..14732819hypothetical protein
LOC_Os09g24740NANA9+14737436..14742086retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38084.2.S1_x_at--614--1491Chr09:14713412..14713436 (25 bp)
AGCAACAATTGCAGTCCGTGCGGCT
LOC_Os09g24710
Os.38084.2.S1_x_at--937--2951Chr09:14713451..14713475 (25 bp)
AAGGCCATCTGGCATTGCTGCAGTT
LOC_Os09g24710
Os.38084.2.S1_x_at--329--9051Chr09:14713469..14713493 (25 bp)
TGCAGTTGCACCTACTTGGGCTGGA
LOC_Os09g24710
Os.38084.2.S1_x_at--56--10651Chr09:14713498..14713522 (25 bp)
TTCCCATTGTATTTGGCCGAGGTTC
LOC_Os09g24710
Os.38084.2.S1_x_at--353--4191Chr09:14714945..14714969 (25 bp)
CCCGGCTATTGGCTGGATGATGTAC
LOC_Os09g24710
Os.38084.2.S1_x_at--243--7391Chr09:14714979..14715003 (25 bp)
GTGAGCAACGAGAAGTCCATCCAGT
LOC_Os09g24710
Os.38084.2.S1_x_at--103--7251Chr09:14715002..14715026 (25 bp)
GTCCCAGTACAAGTCTCACGTTTAT
LOC_Os09g24710
Os.38084.2.S1_x_at--1007--10411Chr09:14715023..14715047 (25 bp)
TTATGCCAACCCTGAGAACGTGACT
LOC_Os09g24710
Os.38084.2.S1_x_at--1042--1511Chr09:14715468..14715492 (25 bp)
AGCAGCATCAATTCCTGTCTGGGTG
LOC_Os09g24710
Os.38084.2.S1_x_at--913--7171Chr09:14715484..14715508 (25 bp)
GTCTGGGTGCCACATTTCCAAGCTT
LOC_Os09g24710
Os.38084.2.S1_x_at--657--5131Chr09:14715510..14715534 (25 bp)
GCAAACCAACCACAATTCCATATAT
LOC_Os09g24710
Target Sequence 
AGCAACAATTGCAGTCCGTGCGGCTGGGAAGGGCCTTATAAGGCCATCTGGCATTGCTGCAGTTGCACCTACTTGGGCTG
GACCCCTTCCCATTGTATTTGGCCGAGGTTCTGATATGGAGACAAGGTATGGGCTTCTACGAGGGACCCTCAGGGCCCCG
GCTATTGGCTGGATGATGTACAATGTTCTGGTGAGCAACGAGAAGTCCATCCAGTCCCAGTACAAGTCTCACGTTTATGC
CAACCCTGAGAACGTGACTCCAAATATCGTGGAAAGTCGCTACGAGTTAACCAAAAGGAATCATTCTCGTCAGGTAGATG
AATGTGCAGTTACGACAACTACGGCAGGGTCAAATTCAACAACATCCTATACTCATACTGTACTAGAGCTTGTAGTAACA
GAAGCAGCAGCATCAATTCCTGTCTGGGTGCCACATTTCCAAGCTTGGCAAACCAACCACAATTCCATATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38084.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis