Browse Element(s) Details


Os.38169.1.S1_a_at

Description gb:AK066709.1
DB_XREF= gi:32976727
TID=Os.38169.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.38169 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013074O18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013074O18, full insert sequence.
FL= gb:AK066709.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4311011/11Sodium/calcium exchanger 1 precursor, putative, expressed
LOC_Os11g4386011/11magnesium/proton exchanger, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43060NANA2+25925642..25928035retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g43070OsAffx.30921.1.S1_s_at11/112+25931303..25932544hypothetical protein
LOC_Os02g43070OsAffx.30921.1.S1_x_at11/112+25931303..25932544hypothetical protein
LOC_Os02g43070OsAffx.30921.2.S1_at3/112+25931303..25932544hypothetical protein
LOC_Os02g43070OsAffx.24253.1.S1_x_at1/112+25931303..25932544hypothetical protein
LOC_Os02g43080NANA2+25934472..25938241salt-inducible protein, putative
LOC_Os02g43090Os.10557.1.S1_at11/112+25940594..25949456Myristoyl-acyl carrier protein thioesterase, chloroplast precursor, putative, expressed
LOC_Os02g43100OsAffx.12468.1.S1_at10/112+25949533..25950487hypothetical protein
LOC_Os02g43110Os.38169.1.S1_a_at11/112+25951291..25953508Sodium/calcium exchanger 1 precursor, putative, expressed
LOC_Os02g43110Os.38169.2.S1_at11/112+25951291..25953508Sodium/calcium exchanger 1 precursor, putative, expressed
LOC_Os02g43120Os.57205.1.S1_at11/112+25961884..25962865Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g43130Os.25560.1.S1_at11/112+25966617..25972993kinesin heavy chain, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006812biological_processcation transport
GO:0006829biological_processzinc ion transport
GO:0015693biological_processmagnesium ion transport
GO:0005774cellular_componentvacuolar membrane
GO:0005432molecular_functioncalcium:sodium antiporter activity
GO:0015491molecular_functioncation:cation antiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38169.1.S1_a_at--1044--10732Chr11:25982294..25982318 (25 bp)
TTGCAAGCAAGATAGCGGCTGAGCG
LOC_Os11g43860
Os.38169.1.S1_a_at--128--5172Chr11:25982292..25982316 (25 bp)
GCAAGCAAGATAGCGGCTGAGCGTC
LOC_Os11g43860
Os.38169.1.S1_a_at--169--9432Chr11:25982116..25982140 (25 bp)
TCGGTGAACATATATGTCGGCATTG
LOC_Os11g43860
Os.38169.1.S1_a_at--808--3572Chr11:25982108..25982132 (25 bp)
CATATATGTCGGCATTGGTGTTCCA
LOC_Os11g43860
Os.38169.1.S1_a_at--1125--10172Chr11:25982106..25982130 (25 bp)
TATATGTCGGCATTGGTGTTCCATG
LOC_Os11g43860
Os.38169.1.S1_a_at--484--772Chr11:25982103..25982127 (25 bp)
ATGTCGGCATTGGTGTTCCATGGTT
LOC_Os11g43860
Os.38169.1.S1_a_at--318--9452Chr11:25982100..25982124 (25 bp)
TCGGCATTGGTGTTCCATGGTTGGT
LOC_Os11g43860
Os.38169.1.S1_a_at--291--3612Chr11:25982096..25982120 (25 bp)
CATTGGTGTTCCATGGTTGGTGGAC
LOC_Os11g43860
Os.38169.1.S1_a_at--930--7412Chr11:25982091..25982115 (25 bp)
GTGTTCCATGGTTGGTGGACACAAT
LOC_Os11g43860
Os.38169.1.S1_a_at--894--4332Chr11:25982086..25982110 (25 bp)
CCATGGTTGGTGGACACAATGTACA
LOC_Os11g43860
Os.38169.1.S1_a_at--1079--6612Chr11:25982081..25982105 (25 bp)
GTTGGTGGACACAATGTACAACTAT
LOC_Os11g43860
Target Sequence 
TTGCAAGCAAGATAGCGGCTGAGCGTCAAATCACCGCCGACTCCGCAATCACCAACATCACTTGCAGCAATTCGGTGAAC
ATATATGTCGGCATTGGTGTTCCATGGTTGGTGGACACAATGTACAACTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38169.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis