Browse Element(s) Details


Os.38179.3.S1_x_at

Description gb:AK062773.1
DB_XREF= gi:32972791
TID=Os.38179.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38179 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-107-A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-107-A05, full insert sequence.
FL= gb:AK062773.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4207011/11Protein kinase domain containing protein, expressed
LOC_Os12g420402/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42040Os.38179.2.S1_at4/1112+26039751..26042595Protein kinase domain containing protein, expressed
LOC_Os12g42040Os.38179.3.S1_x_at2/1112+26039751..26042595Protein kinase domain containing protein, expressed
LOC_Os12g42040Os.38179.3.S1_at1/1112+26039751..26042595Protein kinase domain containing protein, expressed
LOC_Os12g42050NANA12+26049259..26052356Protein kinase domain containing protein, expressed
LOC_Os12g42060Os.52032.1.S1_at11/1112+26053857..26055268wall-associated kinase 3, putative, expressed
LOC_Os12g42070Os.38179.3.S1_at11/1112+26060046..26064118Protein kinase domain containing protein, expressed
LOC_Os12g42070Os.38179.2.S1_at11/1112+26060046..26064118Protein kinase domain containing protein, expressed
LOC_Os12g42070Os.38179.3.S1_x_at11/1112+26060046..26064118Protein kinase domain containing protein, expressed
LOC_Os12g42090Os.3377.1.S1_at11/1112+26067505..2606993737 kDa inner envelope membrane protein, chloroplast precursor, putative, expressed
LOC_Os12g42100OsAffx.7861.1.S1_x_at5/1112+26071350..26075120hypothetical protein
LOC_Os12g42110OsAffx.7861.1.S1_x_at10/1112+26076981..26082102hypothetical protein
LOC_Os12g42110OsAffx.7861.1.S1_at9/1112+26076981..26082102hypothetical protein
LOC_Os12g42120OsAffx.20084.1.S1_at11/1112+26084259..26086439pentatricopeptide, putative
LOC_Os12g42130Os.50779.1.S1_at11/1112+26086767..26089282TRANSPARENT TESTA 12 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38179.3.S1_x_at--318--9871Chr12:26062309..26062333 (25 bp)
TACAGACTAGCTTACACAAGTTTAG
LOC_Os12g42070
Os.38179.3.S1_x_at--879--10051Chr12:26062331..26062355 (25 bp)
TAGTTTGACTTCTGAATGCATGCTT
LOC_Os12g42070
Os.38179.3.S1_x_at--815--3011Chr12:26062345..26062369 (25 bp)
AATGCATGCTTTTTGTCTCTGTCTT
LOC_Os12g42070
Os.38179.3.S1_x_at--637--10811Chr12:26062357..26062381 (25 bp)
TTGTCTCTGTCTTCAGACGTGGATG
LOC_Os12g42070
Os.38179.3.S1_x_at--463--4571Chr12:26062385..26062409 (25 bp)
GCGCATTACGTAAGCAGGATCCCAA
LOC_Os12g42070
Os.38179.3.S1_x_at--1001--931Chr12:26062432..26062456 (25 bp)
AGGAAAGGAGTCTGCCACAACACAC
LOC_Os12g42070
Os.38179.3.S1_x_at--805--3131Chr12:26062507..26062531 (25 bp)
AATTATGGATGTCGACCTCTGCGTA
LOC_Os12g42070
Os.38179.3.S1_x_at--151--3472Chr12:26062766..26062790 (25 bp)
CAGTGTTTCGGCCATTGCGCTAATG
LOC_Os12g42070
Os.38179.3.S1_x_at--643--4571Chr12:26062782..26062806 (25 bp)
GCGCTAATGGCTTTGACATGCGTGT
LOC_Os12g42070
Os.38179.3.S1_x_at--674--611Chr12:26062799..26062823 (25 bp)
ATGCGTGTTGGCCATGCAAATACAA
LOC_Os12g42070
Os.38179.3.S1_x_at--7--1032Chr12:26062906..26062930 (25 bp)
AGGTAGACACAATCCGCATACTCAC
LOC_Os12g42070
Target Sequence 
TACAGACTAGCTTACACAAGTTTAGTTTGACTTCTGAATGCATGCTTTTTGTCTCTGTCTTCAGACGTGGATGAGTGCGC
ATTACGTAAGCAGGATCCCAAGTATGAAGATATATATCCTTGCAGGAAAGGAGTCTGCCACAACACACCAGGAGGATATT
TATGCAAATGCAAGTTAGGAAAAAGATCTGATGGTACAAATTATGGATGTCGACCTCTGCGTACTACAGCAGAGCAAGTG
GTTATTGGCACCAGTGTTTCGGCCATTGCGCTAATGGCTTTGACATGCGTGTTGGCCATGCAAATACAAAGGAAAAGGCA
TAAGAAGGACAAAGATGAGTATTTCAAGCAAAATGGAGGTCTAAAGCTATATGATGAGATGAGATCAAGGAAGGTAGACA
CAATCCGCATACTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38179.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis