Browse Element(s) Details


Os.38367.1.S1_s_at

Description gb:AK059693.1
DB_XREF= gi:32969711
TID=Os.38367.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.38367 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-032-B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-032-B09, full insert sequence.
FL= gb:AK059693.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5105011/11Peptide transporter PTR2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51020Os.17861.1.S2_at11/113+29108530..29115730protein kinase, putative, expressed
LOC_Os03g51020Os.17861.1.S1_at11/113+29108530..29115730protein kinase, putative, expressed
LOC_Os03g51030Os.272.1.S1_at11/113+29118715..29126579Phytochrome A, putative, expressed
LOC_Os03g51030Os.47842.1.A1_s_at11/113+29118715..29126579Phytochrome A, putative, expressed
LOC_Os03g51040OsAffx.13452.1.S1_at10/113+29131475..29133714Protein kinase domain containing protein
LOC_Os03g51050Os.38367.1.S1_s_at11/113+29135580..29140934Peptide transporter PTR2, putative, expressed
LOC_Os03g51060NANA3+29141702..29142233Leucine-rich repeat receptor protein kinase EXS precursor, putative
LOC_Os03g51080Os.9438.1.S1_at11/113+29150783..29159315Glutamate decarboxylase, putative, expressed
LOC_Os03g51080Os.17946.1.A1_x_at11/113+29150783..29159315Glutamate decarboxylase, putative, expressed
LOC_Os03g51090Os.20600.1.S1_x_at11/113+29160523..29162777F-box domain containing protein, expressed
LOC_Os03g51090Os.20600.1.S1_at11/113+29160523..29162777F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0015833biological_processpeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015197molecular_functionpeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38367.1.S1_s_at--689--6691Chr03:29136205..29136229 (25 bp)
GTTCCAGTACCACTGAACATCTGCT
LOC_Os03g51050
Os.38367.1.S1_s_at--902--3111Chr03:29136168..29136192 (25 bp)
AATATTTCTTGGTTGGTGCCTCAGA
LOC_Os03g51050
Os.38367.1.S1_s_at--516--6151Chr03:29136145..29136169 (25 bp)
GAGGTCTTCACATTTGTCGGGTCAC
LOC_Os03g51050
Os.38367.1.S1_s_at--539--9431Chr03:29136129..29136153 (25 bp)
TCGGGTCACTTGAGTTCTTCTATGA
LOC_Os03g51050
Os.38367.1.S1_s_at--788--6451Chr03:29136106..29136130 (25 bp)
GATCAATCACCGGATGCCATGAGGA
LOC_Os03g51050
Os.38367.1.S1_s_at--734--4931Chr03:29136062..29136086 (25 bp)
GCTTGTCACAACAGCTCTTGGGAAT
LOC_Os03g51050
Os.38367.1.S1_s_at--426--10751Chr03:29136019..29136043 (25 bp)
TTGACATTGGTTGCGTACTTCACAA
LOC_Os03g51050
Os.38367.1.S1_s_at--1070--1251Chr03:29135942..29135966 (25 bp)
AGATTATTTCTTCTGGCTTCTTGCT
LOC_Os03g51050
Os.38367.1.S1_s_at--779--5731Chr03:29135827..29135851 (25 bp)
GACTGTCGTCATGGGAATTTCACTT
LOC_Os03g51050
Os.38367.1.S1_s_at--152--2531Chr03:29135745..29135769 (25 bp)
AACTTTAACCATCCTGTACTCTGTA
LOC_Os03g51050
Os.38367.1.S1_s_at--536--2991Chr03:29135654..29135678 (25 bp)
AATGTAGCTTTGCTTCCAATGCGTC
LOC_Os03g51050
Target Sequence 
GTTCCAGTACCACTGAACATCTGCTGGCAAATTCCTCAATATTTCTTGGTTGGTGCCTCAGAGGTCTTCACATTTGTCGG
GTCACTTGAGTTCTTCTATGATCAATCACCGGATGCCATGAGGAGCCTCTGCAGCGCACTGCAGCTTGTCACAACAGCTC
TTGGGAATTATCTCAGTGCATTCATTTTGACATTGGTTGCGTACTTCACAACAAGAGGAGGAAATCCTGGATGGATTCCT
GATAACTTGAATCAAGGTCACCTAGATTATTTCTTCTGGCTTCTTGCTGGGCTCAGTTTTCTGAACTTTGTGATATATGT
CATCTGCGCAAACAAATACAAAAGCAAGAAAGCAGCTTGAGCTAATCAGGAGTTAAAAGACTGTCGTCATGGGAATTTCA
CTTCAAAATTCTGTATATATGTGCACAAAGTACATGTTGAAGCAGCGACCGTAACAAGAGAACTTTAACCATCCTGTACT
CTGTATTTGATGCTACTATACATTTTATACTTTTTGTTCTGTAGATATTAATTTATTGAAGCTACTTGTGGAATGTAGCT
TTGCTTCCAATGCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38367.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis