Browse Element(s) Details


Os.39228.1.S1_at

Description gb:CF291582
DB_XREF= gi:33660615
DB_XREF=14ROOT--02-B03.g1
CLONE=14ROOT--02-B03
TID=Os.39228.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.39228 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative glutathione S-transferase (OSJNBa0093B11.8), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3402011/11Glutathione S-transferase, N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33980NANA10+17791154..17791675Pyruvate decarboxylase isozyme 3, putative
LOC_Os10g33990NANA10+17800160..17800743expressed protein
LOC_Os10g34000Os.46867.2.S1_x_at11/1110+17811393..17813051aquaporin PIP2.4, putative
LOC_Os10g34010NANA10+17815487..17815951hypothetical protein
LOC_Os10g34020Os.39228.1.S1_at11/1110+17816507..17820189Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os10g34020Os.46635.1.S1_x_at1/1110+17816507..17820189Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os10g34030Os.46663.1.S1_x_at11/1110+17821105..17827053Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g34030Os.50626.1.S1_at11/1110+17821105..17827053Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g34040OsAffx.20242.2.S1_at11/1110+17839517..17842712nodulin, putative, expressed
LOC_Os10g34050OsAffx.30663.1.S1_at11/1110+17843253..17845651hypothetical protein
LOC_Os10g34050OsAffx.30663.1.S1_x_at11/1110+17843253..17845651hypothetical protein
LOC_Os10g34050OsAffx.30663.2.S1_at11/1110+17843253..17845651hypothetical protein
LOC_Os10g34050OsAffx.8016.1.S1_x_at1/1110+17843253..17845651hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009407biological_processtoxin catabolism
GO:0005737cellular_componentcytoplasm
GO:0004364molecular_functionglutathione transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39228.1.S1_at--732--10651Chr10:17816971..17816995 (25 bp)
TTCCTCCAAGGATTCGGATATTGAG
LOC_Os10g34020
Os.39228.1.S1_at--716--211Chr10:17816954..17816978 (25 bp)
ATATTGAGAGGAACCGTCCCCGGAG
LOC_Os10g34020
Os.39228.1.S1_at--204--5391Chr10:17816921..17816945 (25 bp)
GAAGCGTCCGACGAAATGACAACCG
LOC_Os10g34020
Os.39228.1.S1_at--75--8971Chr10:17816905..17816929 (25 bp)
TGACAACCGCTCTGCTGTATTTAGA
LOC_Os10g34020
Os.39228.1.S1_at--560--991Chr10:17816881..17816905 (25 bp)
AGGAGGCATTCGTCGAGTGCAGCAA
LOC_Os10g34020
Os.39228.1.S1_at--1049--9431Chr10:17816806..17816830 (25 bp)
TCGGATCGCACCTCGGATGGATCAG
LOC_Os10g34020
Os.39228.1.S1_at--395--3991Chr10:17816685..17816709 (25 bp)
CGTGGACGTCATGCCGGATGTTGAT
LOC_Os10g34020
Os.39228.1.S1_at--1073--11Chr10:17816658..17816682 (25 bp)
ATTGGTCGAGTTCACAGCTAAGCTG
LOC_Os10g34020
Os.39228.1.S1_at--119--6791Chr10:17816617..17816641 (25 bp)
GTTAGCTTCCAAATGATCCGTGTCG
LOC_Os10g34020
Os.39228.1.S1_at--938--6371Chr10:17816603..17816627 (25 bp)
GATCCGTGTCGATAATCCGATGAAT
LOC_Os10g34020
Os.39228.1.S1_at--974--4931Chr10:17816543..17816567 (25 bp)
GCATTTTACCAACTGTAGTACTGTG
LOC_Os10g34020
Target Sequence 
TTCCTCCAAGGATTCGGATATTGAGAGGAACCGTCCCCGGAGACAAGGACGAAGCGTCCGACGAAATGACAACCGCTCTG
CTGTATTTAGAGGAGGCATTCGTCGAGTGCAGCAAAGGGAAGCAATACTTCGGCGACGACAGCATCGGCTACCTGGACAT
CGCCCTCGGATCGCACCTCGGATGGATCAGGGCGGTGGAGAGGATCGCCGGCGTCGAGCTCCTCGGCGGCGCGAAGGTCC
CCAACCTGGCTGCCTGGGCGGATCGCTTCTGCGGGCACCCGGCCGTCGTGGACGTCATGCCGGATGTTGATATATTGGTC
GAGTTCACAGCTAAGCTGATTNNNGAGGGCTTTGTTAGCTTCCAAATGATCCGTGTCGATAATCCGATGAATAATCTGTT
TCGACGAAGGAGATTCTTAAGTATTATGCATTTTACCAACTGTAGTACTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39228.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis