Browse Element(s) Details


Os.39511.1.A1_at

Description gb:CF309978
DB_XREF= gi:33681739
DB_XREF=ABF--04-G09.g1
CLONE=ABF--04-G09
TID=Os.39511.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.39511 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g373402/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g37330Os.6206.1.S1_x_at11/116+22047649..22056760Ent-kaurene oxidase, putative, expressed
LOC_Os06g37330Os.6206.2.S1_x_at5/116+22047649..22056760Ent-kaurene oxidase, putative, expressed
LOC_Os06g37340Os.39511.1.A1_at2/116+22065285..22071259retrotransposon protein, putative, unclassified
LOC_Os06g37364Os.6206.2.S1_x_at11/116+22072900..22081488Ent-kaurene oxidase, putative, expressed
LOC_Os06g37364OsAffx.15795.1.S1_at11/116+22072900..22081488Ent-kaurene oxidase, putative, expressed
LOC_Os06g37364Os.6206.1.S1_x_at5/116+22072900..22081488Ent-kaurene oxidase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39511.1.A1_at--947--391Chr06:22065737..22065761 (25 bp)
ATCAGCTCATGTGCCAACTACTGTG
LOC_Os06g37340
Os.39511.1.A1_at--452--8651Chr06:22065721..22065740 (20 bp)
TGTGGCTTCTATTTGGAGGTCCAAC
LOC_Os06g37340
Os.39511.1.A1_at--616--5991Chr06:22064909..22064933 (25 bp)
GAGACTGTTTCTCTGAATGATGCGA
NONE
Os.39511.1.A1_at--704--4551Chr06:22064871..22064895 (25 bp)
GCCCAAGTCAGCTGATCTACAGTTG
NONE
Os.39511.1.A1_at--1047--6831Chr06:22063725..22063749 (25 bp)
GTTTCTCTGAAAGTCCATGTTTTTG
NONE
Os.39511.1.A1_at--583--4331Chr06:22063711..22063735 (25 bp)
CCATGTTTTTGTGGACTTCTCTAAA
NONE
Os.39511.1.A1_at--225--8891Chr06:22063684..22063708 (25 bp)
TGAGGAAGAGCGCTCCTTGACTCCC
NONE
Os.39511.1.A1_at--928--5711Chr06:22063666..22063690 (25 bp)
GACTCCCCGAAAGAGATGGATCCTA
NONE
Os.39511.1.A1_at--130--831Chr06:22063651..22063675 (25 bp)
ATGGATCCTAGCATCCTCGATGTAA
NONE
Os.39511.1.A1_at--650--7271Chr06:22063559..22063583 (25 bp)
GTGCCATTAACTATATATTCCGCGC
NONE
Os.39511.1.A1_at--656--671NONE
ATGACACCATATTACTCTTTCCAAA
NONE
Target Sequence 
ATCAGCTCATGTGCCAACTACTGTGGCTTCTATTTGGAGGTCCAACAGATGGATATAAACTTGAGACTGTTTCTCTGAAT
GATGCGAGTGCTTATCTTCNGCCCAAGTCAGCTGATCTACAGTTGGGGAGGTTTCTTCTTTGAGCAACAAGGTGTCATGA
AGAGCATAGCTATGCGGAAATGTTGAATGTTTCTCTGAAAGTCCATGTTTTTGTGGACTTCTCTAAAAATGAGGAAGAGC
GCTCCTTGACTCCCCGAAAGAGATGGATCCTAGCATCCTCGATGTAAATTATTTCNCCACGTAGTGTTAGATTACCATAT
CGATGTTTACATACCGGACATTTGTATTTATTATGTGCCATTAACTATATATTCCGCGCACGCAGCGGAGTNGCTGTTTC
TTTCTAGTACTTATTATATGACACCATATTACTCTTTCCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39511.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis