Browse Element(s) Details

Description

tigr:9634.m03560
TID=OsAffx.15795.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g37364	11/11	Ent-kaurene oxidase, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g37330	Os.6206.1.S1_x_at	11/11	6	+	22047649..22056760	Ent-kaurene oxidase, putative, expressed
LOC_Os06g37330	Os.6206.2.S1_x_at	5/11	6	+	22047649..22056760	Ent-kaurene oxidase, putative, expressed
LOC_Os06g37340	Os.39511.1.A1_at	2/11	6	+	22065285..22071259	retrotransposon protein, putative, unclassified
LOC_Os06g37364	Os.6206.2.S1_x_at	11/11	6	+	22072900..22081488	Ent-kaurene oxidase, putative, expressed
LOC_Os06g37364	OsAffx.15795.1.S1_at	11/11	6	+	22072900..22081488	Ent-kaurene oxidase, putative, expressed
LOC_Os06g37364	Os.6206.1.S1_x_at	5/11	6	+	22072900..22081488	Ent-kaurene oxidase, putative, expressed
LOC_Os06g37390	OsAffx.27975.1.S1_at	8/11	6	+	22097433..22097888	hypothetical protein
LOC_Os06g37400	Os.46012.2.S1_x_at	6/11	6	+	22102579..22112818	retrotransposon protein, putative, unclassified
LOC_Os06g37400	Os.46012.3.S1_x_at	5/11	6	+	22102579..22112818	retrotransposon protein, putative, unclassified
LOC_Os06g37400	Os.46012.3.S1_at	4/11	6	+	22102579..22112818	retrotransposon protein, putative, unclassified
LOC_Os06g37400	Os.27088.1.A1_x_at	2/11	6	+	22102579..22112818	retrotransposon protein, putative, unclassified
LOC_Os06g37400	Os.54691.1.S1_x_at	1/11	6	+	22102579..22112818	retrotransposon protein, putative, unclassified
LOC_Os06g37400	OsAffx.28013.1.S1_at	1/11	6	+	22102579..22112818	retrotransposon protein, putative, unclassified

Gene Ontology Classification

GO id	Type	Name
GO:0006118	biological_process	electron transport
GO:0009686	biological_process	gibberellic acid biosynthesis
GO:0009699	biological_process	phenylpropanoid biosynthesis
GO:0009740	biological_process	gibberellic acid mediated signaling
GO:0009809	biological_process	lignin biosynthesis
GO:0005792	cellular_component	microsome
GO:0009707	cellular_component	chloroplast outer membrane
GO:0004497	molecular_function	monooxygenase activity
GO:0010241	molecular_function	ent-kaurene oxidase activity
GO:0019825	molecular_function	oxygen binding
GO:0046409	molecular_function	p-coumarate 3-hydroxylase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.15795.1.S1_at--855--769	1	Chr06:22080316..22080340 (25 bp)	GGTGGCGGCAGTTGGAGGGTTTGTC	LOC_Os06g37364
OsAffx.15795.1.S1_at--942--1083	1	Chr06:22080305..22080329 (25 bp)	TTGGAGGGTTTGTCGCTGCGGCCGC	LOC_Os06g37364
OsAffx.15795.1.S1_at--195--181	2	Chr06:22080031..22080260 (25 bp)	ACGCGCCCCCAGATTTGAGAGCCAA	LOC_Os06g37364
OsAffx.15795.1.S1_at--153--421	2	Chr06:22080025..22080045 (21 bp)	CCCCAGATTTGAGAGCCAATCAAGT	LOC_Os06g37364
OsAffx.15795.1.S1_at--24--587	2	Chr06:22080013..22080037 (25 bp)	GAGCCAATCAAGTTTGCATTCGCCA	LOC_Os06g37364
OsAffx.15795.1.S1_at--457--439	2	Chr06:22080011..22080035 (25 bp)	GCCAATCAAGTTTGCATTCGCCACA	LOC_Os06g37364
OsAffx.15795.1.S1_at--198--309	2	Chr06:22080008..22080032 (25 bp)	AATCAAGTTTGCATTCGCCACAATT	LOC_Os06g37364
OsAffx.15795.1.S1_at--93--973	2	Chr06:22080006..22080030 (25 bp)	TCAAGTTTGCATTCGCCACAATTTT	LOC_Os06g37364
OsAffx.15795.1.S1_at--707--685	2	Chr06:22080002..22080026 (25 bp)	GTTTGCATTCGCCACAATTTTCGCA	LOC_Os06g37364
OsAffx.15795.1.S1_at--348--905	2	Chr06:22079999..22080023 (25 bp)	TGCATTCGCCACAATTTTCGCACCG	LOC_Os06g37364
OsAffx.15795.1.S1_at--730--1059	1	Chr06:22079995..22080019 (25 bp)	TTCGCCACAATTTTCGCACCGTTCT	LOC_Os06g37364

Target Sequence

GGTGGCGGCAGTTGGAGGGTTTGTCGCTGCGGCCGCGCTCGCCGAGAGGGCCGGCGTGATCGCGCCAAGGAAACGCTCCA
ACGCGCCCCCAGATTTGAGAGCCAATCAAGTTTGCATTCGCCACAATTTTCGCACCGTTCT

Expression Profiles

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project: