Browse Element(s) Details


OsAffx.27975.1.S1_at

Description tigr:9633.m03322
TID=OsAffx.27975.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3566010/11hypothetical protein
LOC_Os06g373908/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35630OsAffx.4532.1.S1_at11/115+21083529..21083978hypothetical protein
LOC_Os05g35650Os.53707.1.S1_x_at1/115+21088676..21103104POT family protein, expressed
LOC_Os05g35660OsAffx.27975.1.S1_at10/115+21103583..21104337hypothetical protein
LOC_Os05g35670OsAffx.4533.1.S1_at10/115+21107614..21108377oligopeptide transporter, putative
LOC_Os05g35680OsAffx.27182.1.S1_at11/115+21111539..21112761hypothetical protein
LOC_Os05g35690Os.17900.1.S1_s_at11/115+21114928..21115803Gibberellin-regulated protein 2 precursor, putative, expressed
LOC_Os05g35700NANA5+21116650..21117224hypothetical protein
LOC_Os05g35710Os.8839.1.S1_at11/115+21118679..21121719expressed protein
LOC_Os05g35710Os.8839.2.S1_at11/115+21118679..21121719expressed protein
LOC_Os05g35710Os.8839.2.S1_x_at11/115+21118679..21121719expressed protein
LOC_Os05g35720Os.18304.1.S1_at9/115+21122681..21124515TMEM18 protein, putative, expressed
LOC_Os05g35730Os.32965.1.S1_at11/115+21124736..21131244hydrolase, alpha/beta fold family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27975.1.S1_at--198--8332Chr05:21103544..21103568 (25 bp)
GGCTCGCGCGTCGTGAATCACATGC
NONE
OsAffx.27975.1.S1_at--766--2572Chr05:21103624..21103648 (25 bp)
AACGGCGACAAGTCAAAGCCCTTGG
LOC_Os05g35660
OsAffx.27975.1.S1_at--132--912Chr05:21103666..21103690 (25 bp)
AGGCGTTCAGCACCTTGCGCAATTC
LOC_Os05g35660
OsAffx.27975.1.S1_at--827--9152Chr05:21103681..21103705 (25 bp)
TGCGCAATTCATCCTTGTCGTTGTC
LOC_Os05g35660
OsAffx.27975.1.S1_at--766--8712Chr05:21103696..21103720 (25 bp)
TGTCGTTGTCGACATTGCCAAGCAT
LOC_Os05g35660
OsAffx.27975.1.S1_at--797--1972Chr05:21103785..21103809 (25 bp)
ACTGCATCTTGTGGAGGCCGGCGAA
LOC_Os05g35660
OsAffx.27975.1.S1_at--682--6132Chr05:21103831..21103855 (25 bp)
GAGGTCGAACAACATCTTGATGAGC
LOC_Os05g35660
OsAffx.27975.1.S1_at--789--6492Chr05:21103913..21103937 (25 bp)
GATAGATGCACACCAGGTTCTCGTC
LOC_Os05g35660
OsAffx.27975.1.S1_at--577--10592Chr05:21103930..21103954 (25 bp)
TTCTCGTCTTGGAACAGTAGCGCGC
LOC_Os05g35660
OsAffx.27975.1.S1_at--951--9072Chr05:21103975..21103999 (25 bp)
TGCTACAGGACTAGAGGTCGGCCTT
LOC_Os05g35660
OsAffx.27975.1.S1_at--426--1032Chr05:21103989..21104013 (25 bp)
AGGTCGGCCTTGGTGCTATCGTAGC
LOC_Os05g35660
Target Sequence 
GGCTCGCGCGTCGTGAATCACATGCCACCCACGCGCGCCNTGGCTCGCCCTTGCGACACGGCAGGGTCGTACNCACGAGC
AACGGCGACAAGTCAAAGCCCTTGGAAGGGACATCAGGTGGAAGGCGTTCAGCACCTTGCGCAATTCATCCTTGTCGTTG
TCGACATTGCCAAGCATGTCCACTGGCTCCTGCGCGAGCTTGGTGANNTGGGTCACNGAACATNTGCCATCTTCCGGAAC
CACTGCATCTTGTGGAGGCCGGCGAAGGTGATGCAGGTGTCTGGGTTGAGGTCGAACAACATCTTGATGAGCTTCCGTGC
GTCCGTTGTCAACCACGTCGGGCAGCTGAAGTCACCNTGCCGCATCTTGTGATAGATGCACACCAGGTTCTCGTCTTGGA
ACAGTAGCGCGCCGGCGAGCAATAGAGGATGATGCTACAGGACTAGAGGTCGGCCTTGGTGCTATCGTAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27975.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis