Browse Element(s) Details


OsAffx.4532.1.S1_at

Description tigr:9633.m03319
TID=OsAffx.4532.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3563011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35580Os.11493.1.A1_at11/115+21058192..21060267Amidophosphoribosyltransferase, chloroplast precursor, putative, expressed
LOC_Os05g35594OsAffx.4531.1.S1_s_at11/115+21061148..21065177POT family protein, expressed
LOC_Os05g35594Os.52604.1.A1_at10/115+21061148..21065177POT family protein, expressed
LOC_Os05g35594OsAffx.22811.1.S1_at3/115+21061148..21065177POT family protein, expressed
LOC_Os05g35594OsAffx.22005.1.S1_x_at1/115+21061148..21065177POT family protein, expressed
LOC_Os05g35610NANA5+21075248..21076065hypothetical protein
LOC_Os05g35620OsAffx.27180.1.S1_x_at11/115+21078150..21078560hypothetical protein
LOC_Os05g35620OsAffx.27180.1.S1_at11/115+21078150..21078560hypothetical protein
LOC_Os05g35630OsAffx.4532.1.S1_at11/115+21083529..21083978hypothetical protein
LOC_Os05g35650Os.53707.1.S1_x_at1/115+21088676..21103104POT family protein, expressed
LOC_Os05g35660OsAffx.27975.1.S1_at10/115+21103583..21104337hypothetical protein
LOC_Os05g35670OsAffx.4533.1.S1_at10/115+21107614..21108377oligopeptide transporter, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4532.1.S1_at--69--9051Chr05:21083567..21083591 (25 bp)
TGCAGCTGACGGTTGGGCGCGCCGT
LOC_Os05g35630
OsAffx.4532.1.S1_at--268--5051Chr05:21083651..21083675 (25 bp)
GCAGACCGGCGTTGGTGGCGCAGCC
LOC_Os05g35630
OsAffx.4532.1.S1_at--264--7711Chr05:21083685..21083709 (25 bp)
GGGTGCGGGCCATGCGACGAGGCGA
LOC_Os05g35630
OsAffx.4532.1.S1_at--483--7191Chr05:21083717..21083741 (25 bp)
GTCGGCTGTCCTCGTAATTATAGTA
LOC_Os05g35630
OsAffx.4532.1.S1_at--497--4731Chr05:21083721..21083745 (25 bp)
GCTGTCCTCGTAATTATAGTAGTTC
LOC_Os05g35630
OsAffx.4532.1.S1_at--687--1171Chr05:21083738..21083762 (25 bp)
AGTAGTTCATAATTCGTCGACCGCG
LOC_Os05g35630
OsAffx.4532.1.S1_at--9--1231Chr05:21083741..21083765 (25 bp)
AGTTCATAATTCGTCGACCGCGGCG
LOC_Os05g35630
OsAffx.4532.1.S1_at--418--711Chr05:21083800..21083824 (25 bp)
ATGAGGCTCCGAGGCAGTTTCTGGC
LOC_Os05g35630
OsAffx.4532.1.S1_at--324--3811Chr05:21083806..21083830 (25 bp)
CTCCGAGGCAGTTTCTGGCGCGCGT
LOC_Os05g35630
OsAffx.4532.1.S1_at--104--7771Chr05:21083868..21083892 (25 bp)
GGTGAGGCGCGGTTCCTAGCATGGG
LOC_Os05g35630
OsAffx.4532.1.S1_at--687--9011Chr05:21083921..21083945 (25 bp)
TGCAACGCAAGGGCGAACCGGCGAA
LOC_Os05g35630
Target Sequence 
TGCAGCTGACGGTTGGGCGCGCCGTGCGACGAGGAAGGCGCCGAGCGCGGCAAAGGAGTGGGGTCATCGCGGAGCGGGCG
CGTCGCAGACCGGCGTTGGTGGCGCAGCCGACGGTGGGGGGTGCGGGCCATGCGACGAGGCGACCCCACCGTCGGCTGTC
CTCGTAATTATAGTAGTTCATAATTCGTCGACCGCGGCGGAGGAATGGAGGAGTGGGGTCGGTGCGGCAGCCGATGAGGC
TCCGAGGCAGTTTCTGGCGCGCGTGGCGGATCTGCGGCGACGGCGAATCATGGGGTTCGGCGGTGAGGCGCGGTTCCTAG
CATGGGGGTGGGACAACGAGGCGACGGGGAGGGATGCAACGCAAGGGCGAACCGGCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4532.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis