Browse Element(s) Details


Os.52604.1.A1_at

Description gb:AK068274.1
DB_XREF= gi:32978292
TID=Os.52604.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52604 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013145B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013145B01, full insert sequence.
FL= gb:AK068274.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3559410/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35530Os.6302.1.S1_x_at10/115+21037631..21043658expressed protein
LOC_Os05g35530Os.6302.2.S1_at8/115+21037631..21043658expressed protein
LOC_Os05g35540Os.10470.1.S1_s_at10/115+21043643..21046459expressed protein
LOC_Os05g35540Os.18211.1.S1_at1/115+21043643..21046459expressed protein
LOC_Os05g35550OsAffx.4530.1.S1_at11/115+21046706..21047002hypothetical protein
LOC_Os05g35550OsAffx.4530.1.S1_x_at11/115+21046706..21047002hypothetical protein
LOC_Os05g35560OsAffx.14977.1.S1_at11/115+21048639..21049271hypothetical protein
LOC_Os05g35570Os.23672.1.S1_at11/115+21052072..21055429Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os05g35580Os.11493.1.A1_at11/115+21058192..21060267Amidophosphoribosyltransferase, chloroplast precursor, putative, expressed
LOC_Os05g35594OsAffx.4531.1.S1_s_at11/115+21061148..21065177POT family protein, expressed
LOC_Os05g35594Os.52604.1.A1_at10/115+21061148..21065177POT family protein, expressed
LOC_Os05g35594OsAffx.22811.1.S1_at3/115+21061148..21065177POT family protein, expressed
LOC_Os05g35594OsAffx.22005.1.S1_x_at1/115+21061148..21065177POT family protein, expressed
LOC_Os05g35610NANA5+21075248..21076065hypothetical protein
LOC_Os05g35620OsAffx.27180.1.S1_x_at11/115+21078150..21078560hypothetical protein
LOC_Os05g35620OsAffx.27180.1.S1_at11/115+21078150..21078560hypothetical protein
LOC_Os05g35630OsAffx.4532.1.S1_at11/115+21083529..21083978hypothetical protein
LOC_Os05g35650Os.53707.1.S1_x_at1/115+21088676..21103104POT family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52604.1.A1_at--648--4171Chr05:21061606..21061630 (25 bp)
CGCCATGGTCGGGATGCAGGAGTTC
LOC_Os05g35594
Os.52604.1.A1_at--1116--451Chr05:21061415..21061439 (25 bp)
ATCTCGACTACTTCTACCTGCTTCT
LOC_Os05g35594
Os.52604.1.A1_at--668--3651Chr05:21061361..21061385 (25 bp)
CTTACGTATATTTTTCGATGTCTTA
LOC_Os05g35594
Os.52604.1.A1_at--348--10631Chr05:21061348..21061372 (25 bp)
TTCGATGTCTTATATTTACAGGAGA
LOC_Os05g35594
Os.52604.1.A1_at--504--2311Chr05:21061324..21061348 (25 bp)
AAAGGTTGTCGATGTTCAATGATCC
LOC_Os05g35594
Os.52604.1.A1_at--1029--571Chr05:21061303..21061327 (25 bp)
ATCCATGGATCGATGCACGCAATGC
LOC_Os05g35594
Os.52604.1.A1_at--1054--5091Chr05:21061289..21061313 (25 bp)
GCACGCAATGCGCTTGTATAGATGT
LOC_Os05g35594
Os.52604.1.A1_at--1100--6271Chr05:21061269..21061293 (25 bp)
GATGTATATTAACCTGCTGAATTCA
LOC_Os05g35594
Os.52604.1.A1_at--509--4751Chr05:21061254..21061278 (25 bp)
GCTGAATTCAGCATGGTTATAACAG
LOC_Os05g35594
Os.52604.1.A1_at--140--10171Chr05:21061237..21061261 (25 bp)
TATAACAGTATAATGGCAATGCCAG
LOC_Os05g35594
Os.52604.1.A1_at--52--7391Chr05:21061148..21061172 (25 bp)
GTGAGAATCGAAATTCATTGCCTGC
NONE
Target Sequence 
CGCCATGGTCGGGATGCAGGAGTTCTTCTACGACCNAGGTGCCCGGCGCGCNTCAAGAGCCTCGGCCTCGCGCTCTACCT
GAGCGTCCTCGGCGTCGGCAGCTTCATCAGCAGCTTCCTCATCTCGGCCATCGACGTCGTCACGAGGAGGGACGGCGGCA
CCAGCTGGTTCGACGACGACCTCAACCGGGGACATCTCGACTACTTCTACCTGCTTCTTGCNCNGCNGCTCACCGTGCTG
GATCTTNTTGCTTACGTATATTTTTCGATGTCTTATATTTACAGGAGAAAGGTTGTCGATGTTCAATGATCCATGGATCG
ATGCACGCAATGCGCTTGTATAGATGTATATTAACCTGCTGAATTCAGCATGGTTATAACAGTATAATGGCAATGCCAGG
GGTAAAATATTGGTGTAAAATTCCCTCTTTACCTTTATTTTCCTTCTAGTTACAAATAAAGAAGTGAGAATCGAAATTCA
TTGCCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52604.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis