Browse Element(s) Details


Os.6302.2.S1_at

Description gb:AK064776.1
DB_XREF= gi:32974794
TID=Os.6302.2
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6302 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000B01, full insert sequence.
FL= gb:AK064776.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g355308/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35500Os.10175.1.S1_at11/115+21016108..21017402MYB6, putative, expressed
LOC_Os05g35500Os.57514.1.S1_x_at2/115+21016108..21017402MYB6, putative, expressed
LOC_Os05g35510OsAffx.27178.1.S1_at11/115+21020180..21023083hypothetical protein
LOC_Os05g35510OsAffx.25135.2.S1_x_at1/115+21020180..21023083hypothetical protein
LOC_Os05g35510OsAffx.8277.2.S1_at1/115+21020180..21023083hypothetical protein
LOC_Os05g35520Os.20865.1.S1_at11/115+21029401..21034212deoxynucleoside kinase family, putative, expressed
LOC_Os05g35530Os.6302.1.S1_x_at10/115+21037631..21043658expressed protein
LOC_Os05g35530Os.6302.2.S1_at8/115+21037631..21043658expressed protein
LOC_Os05g35540Os.10470.1.S1_s_at10/115+21043643..21046459expressed protein
LOC_Os05g35540Os.18211.1.S1_at1/115+21043643..21046459expressed protein
LOC_Os05g35550OsAffx.4530.1.S1_at11/115+21046706..21047002hypothetical protein
LOC_Os05g35550OsAffx.4530.1.S1_x_at11/115+21046706..21047002hypothetical protein
LOC_Os05g35560OsAffx.14977.1.S1_at11/115+21048639..21049271hypothetical protein
LOC_Os05g35570Os.23672.1.S1_at11/115+21052072..21055429Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os05g35580Os.11493.1.A1_at11/115+21058192..21060267Amidophosphoribosyltransferase, chloroplast precursor, putative, expressed
LOC_Os05g35594OsAffx.4531.1.S1_s_at11/115+21061148..21065177POT family protein, expressed
LOC_Os05g35594Os.52604.1.A1_at10/115+21061148..21065177POT family protein, expressed
LOC_Os05g35594OsAffx.22811.1.S1_at3/115+21061148..21065177POT family protein, expressed
LOC_Os05g35594OsAffx.22005.1.S1_x_at1/115+21061148..21065177POT family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6302.2.S1_at--1155--3851Chr05:21043614..21043638 (25 bp)
CTGATCAACTCTGGTGTAAAGCGTA
LOC_Os05g35530
Os.6302.2.S1_at--653--6351Chr05:21043616..21043640 (25 bp)
GATCAACTCTGGTGTAAAGCGTATG
LOC_Os05g35530
Os.6302.2.S1_at--375--9711Chr05:21043618..21043642 (25 bp)
TCAACTCTGGTGTAAAGCGTATGGT
LOC_Os05g35530
Os.6302.2.S1_at--143--2551Chr05:21043620..21043644 (25 bp)
AACTCTGGTGTAAAGCGTATGGTAA
LOC_Os05g35530
Os.6302.2.S1_at--825--3771Chr05:21043622..21043646 (25 bp)
CTCTGGTGTAAAGCGTATGGTAAAC
LOC_Os05g35530
Os.6302.2.S1_at--1060--9831Chr05:21043630..21043654 (25 bp)
TAAAGCGTATGGTAAACTGCACATC
LOC_Os05g35530
Os.6302.2.S1_at--1078--2671Chr05:21043632..21043656 (25 bp)
AAGCGTATGGTAAACTGCACATCAC
LOC_Os05g35530
Os.6302.2.S1_at--87--4652Chr05:21043634..21043658 (25 bp)
GCGTATGGTAAACTGCACATCACCG
LOC_Os05g35530
Os.6302.2.S1_at--815--6912Chr05:21043636..21043660 (25 bp)
GTATGGTAAACTGCACATCACCGAA
NONE
Os.6302.2.S1_at--202--812Chr05:21043638..21043662 (25 bp)
ATGGTAAACTGCACATCACCGAACA
NONE
Os.6302.2.S1_at--895--7831Chr05:21043640..21043664 (25 bp)
GGTAAACTGCACATCACCGAACAAA
NONE
Target Sequence 
CTGATCAACTCTGGTGTAAAGCGTATGGTAAACTGCACATCACCGAACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6302.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis