Browse Element(s) Details


Os.10175.1.S1_at

Description gb:D88617.1
DB_XREF= gi:2605616
GEN=Osmyb1
TID=Os.10175.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10175 (NCBI UniGene Cluster)
DEF=Oryza sativa mRNA for OSMYB1, complete cds.
PROD=OSMYB1
FL= gb:AK104053.1 gb:AK066834.1 gb:D88617.1 gb:AK099108.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3550011/11MYB6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35470Os.5632.1.S1_a_at11/115+20995250..20996692Dienelactone hydrolase family protein, expressed
LOC_Os05g35470OsAffx.4527.1.S1_s_at11/115+20995250..20996692Dienelactone hydrolase family protein, expressed
LOC_Os05g35480Os.32600.1.S1_at9/115+20997900..21000872C2 domain-containing protein, putative, expressed
LOC_Os05g35490OsAffx.4528.1.S1_at11/115+21007912..21008274hypothetical protein
LOC_Os05g35500Os.10175.1.S1_at11/115+21016108..21017402MYB6, putative, expressed
LOC_Os05g35500Os.57514.1.S1_x_at2/115+21016108..21017402MYB6, putative, expressed
LOC_Os05g35510OsAffx.27178.1.S1_at11/115+21020180..21023083hypothetical protein
LOC_Os05g35510OsAffx.25135.2.S1_x_at1/115+21020180..21023083hypothetical protein
LOC_Os05g35510OsAffx.8277.2.S1_at1/115+21020180..21023083hypothetical protein
LOC_Os05g35520Os.20865.1.S1_at11/115+21029401..21034212deoxynucleoside kinase family, putative, expressed
LOC_Os05g35530Os.6302.1.S1_x_at10/115+21037631..21043658expressed protein
LOC_Os05g35530Os.6302.2.S1_at8/115+21037631..21043658expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009611biological_processresponse to wounding
GO:0009800biological_processcinnamic acid biosynthesis
GO:0009892biological_processnegative regulation of metabolism
GO:0010224biological_processresponse to UV-B
GO:0016481biological_processnegative regulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10175.1.S1_at--72--2611Chr05:21016543..21016567 (25 bp)
AACCTCGAGCTCTCGGTCGGGCCGA
LOC_Os05g35500
Os.10175.1.S1_at--604--8711Chr05:21016426..21016450 (25 bp)
TGTCAGGCTGACAGCAAGGGCCCAC
LOC_Os05g35500
Os.10175.1.S1_at--992--5151Chr05:21016413..21016437 (25 bp)
GCAAGGGCCCACACGAGTTTAGATA
LOC_Os05g35500
Os.10175.1.S1_at--299--1211Chr05:21016398..21016422 (25 bp)
AGTTTAGATATTTCAGGCCGTTGGA
LOC_Os05g35500
Os.10175.1.S1_at--775--4471Chr05:21016382..21016406 (25 bp)
GCCGTTGGAACAAGGCCAGTACATA
LOC_Os05g35500
Os.10175.1.S1_at--563--151Chr05:21016325..21016349 (25 bp)
ATTAGCTTCAATTCCCAACATGTGT
LOC_Os05g35500
Os.10175.1.S1_at--821--2851Chr05:21016296..21016320 (25 bp)
CAGGGAGTTTTTCTAGTGGACGACA
LOC_Os05g35500
Os.10175.1.S1_at--875--7511Chr05:21016281..21016305 (25 bp)
GTGGACGACAATACTGTTTAATTTC
LOC_Os05g35500
Os.10175.1.S1_at--1080--7891Chr05:21016233..21016257 (25 bp)
GGTTCTAATCTGTTCATATTTCTTA
LOC_Os05g35500
Os.10175.1.S1_at--845--131Chr05:21016148..21016172 (25 bp)
ATTAACTTCATGTTGGTTCCTCTAA
LOC_Os05g35500
Os.10175.1.S1_at--396--6611Chr05:21016119..21016143 (25 bp)
GATTGGTCGATGTTATTCAGTGATA
LOC_Os05g35500
Target Sequence 
AACCTCGAGCTCTCGGTCGGGCCGACGCCGAGCTCGCCGCCGGCGGAGACGCCCACCAGCGCGCGGCCGGTCTGCCTCTG
CTACCACCTCGGCTTCCGCGGCGGGGAGGCGTGCAGCTGTCAGGCTGACAGCAAGGGCCCACACGAGTTTAGATATTTCA
GGCCGTTGGAACAAGGCCAGTACATATGAGATATGACCATGAGATGTGAGATGGCTTAATTAGCTTCAATTCCCAACATG
TGTAACACAGGGAGTTTTTCTAGTGGACGACAATACTGTTTAATTTCAGAAAAAAAAAGGGAAAGAAAAAGGTTCTAATC
TGTTCATATTTCTTACNATTATCCAATCTTCATGATCTCAATCTCTCTCTCTCTTTATTATTTTTCTTTGTAGTAATTAA
CTTCATGTTGGTTCCTCTAAAAAAGATTGGTCGATGTTATTCAGTGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10175.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis