Browse Element(s) Details


OsAffx.4527.1.S1_s_at

Description tigr:9633.m03302
TID=OsAffx.4527.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=carboxymethylenebutenolidase family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3547011/11Dienelactone hydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35440Os.25477.1.S1_at11/115+20966598..20971516Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
LOC_Os05g35444Os.4846.1.S1_at11/115+20972061..20973749expressed protein
LOC_Os05g35444OsAffx.1396.1.S1_x_at1/115+20972061..20973749expressed protein
LOC_Os05g35450OsAffx.14976.1.S1_at11/115+20979895..20980137hypothetical protein
LOC_Os05g35460Os.15008.1.S1_at11/115+20982245..20985211Patellin-5, putative, expressed
LOC_Os05g35470Os.5632.1.S1_a_at11/115+20995250..20996692Dienelactone hydrolase family protein, expressed
LOC_Os05g35470OsAffx.4527.1.S1_s_at11/115+20995250..20996692Dienelactone hydrolase family protein, expressed
LOC_Os05g35480Os.32600.1.S1_at9/115+20997900..21000872C2 domain-containing protein, putative, expressed
LOC_Os05g35490OsAffx.4528.1.S1_at11/115+21007912..21008274hypothetical protein
LOC_Os05g35500Os.10175.1.S1_at11/115+21016108..21017402MYB6, putative, expressed
LOC_Os05g35500Os.57514.1.S1_x_at2/115+21016108..21017402MYB6, putative, expressed
LOC_Os05g35510OsAffx.27178.1.S1_at11/115+21020180..21023083hypothetical protein
LOC_Os05g35510OsAffx.25135.2.S1_x_at1/115+21020180..21023083hypothetical protein
LOC_Os05g35510OsAffx.8277.2.S1_at1/115+21020180..21023083hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4527.1.S1_s_at--750--9571Chr05:20996141..20996165 (25 bp)
TCTTCGGCTTCGAGGACTCCGCCAC
LOC_Os05g35470
OsAffx.4527.1.S1_s_at--1034--6111Chr05:20996130..20996154 (25 bp)
GAGGACTCCGCCACCCGGGACTTCG
LOC_Os05g35470
OsAffx.4527.1.S1_s_at--429--1791Chr05:20996102..20996126 (25 bp)
ACCGCGTCGCGTGCCACGGCTACAA
LOC_Os05g35470
OsAffx.4527.1.S1_s_at--660--6711Chr05:20996004..20996028 (25 bp)
GTTCTTGTGCCGGACTTGTTCCGGG
LOC_Os05g35470
OsAffx.4527.1.S1_s_at--206--4111Chr05:20995903..20995927 (25 bp)
CGACATCGACGCGTGCACGAACTGG
LOC_Os05g35470
OsAffx.4527.1.S1_s_at--325--531Chr05:20995899..20995923 (25 bp)
ATCGACGCGTGCACGAACTGGCTGG
LOC_Os05g35470
OsAffx.4527.1.S1_s_at--187--4111Chr05:20995886..20995910 (25 bp)
CGAACTGGCTGGTGGACGAGTTCAC
LOC_Os05g35470
OsAffx.4527.1.S1_s_at--152--1551Chr05:20995841..20995865 (25 bp)
AGCTCGGGATAATCGGGTTCTGCTA
LOC_Os05g35470
OsAffx.4527.1.S1_s_at--176--3971Chr05:20995837..20995861 (25 bp)
CGGGATAATCGGGTTCTGCTACGGG
LOC_Os05g35470
OsAffx.4527.1.S1_s_at--162--7691Chr05:20995748..20995772 (25 bp)
GGGTCTGCTTCTACGGGTCCAGGAT
LOC_Os05g35470
OsAffx.4527.1.S1_s_at--210--3831Chr05:20995744..20995768 (25 bp)
CTGCTTCTACGGGTCCAGGATGGAC
LOC_Os05g35470
Target Sequence 
TCTTCGGCTTCGAGGACTCCGCCACCCGGGACTTCGCCTACCGCGTCGCGTGCCACGGCTACAATGTTCTTGTGCCGGAC
TTGTTCCGGGGGAGCCCGTGGAAGAAGGCGGAGAAGGACGGCTTCGACGCGTGGCTCGCCGGGCACGCGCCGGAGCGGGT
GTCGGGCGACATCGACGCGTGCACGAACTGGCTGGTGGACGAGTTCACGGCGGCGGGGGTGTCGAGGAAGCTCGGGATAA
TCGGGTTCTGCTACGGGGGCGGCCGGCTGGTGGAGACGCTGGCGCGCGACGGCGGCGGCGGCGGCGGCGCCTACAGCGCG
GGGGTCTGCTTCTACGGGTCCAGGATGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4527.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis