Browse Element(s) Details


OsAffx.14976.1.S1_at

Description tigr:9633.m03300
TID=OsAffx.14976.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3545011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35410Os.13562.1.S1_at11/115+20956225..20961695Potassium channel AKT2/3, putative, expressed
LOC_Os05g35420OsAffx.14975.1.S1_at11/115+20964764..20965114hypothetical protein
LOC_Os05g35430Os.32285.1.S1_at2/115+20965255..20965815hypothetical protein
LOC_Os05g35440Os.25477.1.S1_at11/115+20966598..20971516Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
LOC_Os05g35444Os.4846.1.S1_at11/115+20972061..20973749expressed protein
LOC_Os05g35444OsAffx.1396.1.S1_x_at1/115+20972061..20973749expressed protein
LOC_Os05g35450OsAffx.14976.1.S1_at11/115+20979895..20980137hypothetical protein
LOC_Os05g35460Os.15008.1.S1_at11/115+20982245..20985211Patellin-5, putative, expressed
LOC_Os05g35470Os.5632.1.S1_a_at11/115+20995250..20996692Dienelactone hydrolase family protein, expressed
LOC_Os05g35470OsAffx.4527.1.S1_s_at11/115+20995250..20996692Dienelactone hydrolase family protein, expressed
LOC_Os05g35480Os.32600.1.S1_at9/115+20997900..21000872C2 domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14976.1.S1_at--574--571Chr05:20980075..20980099 (25 bp)
ATCCAGCAACGGTGAGGTCTGGAGT
LOC_Os05g35450
OsAffx.14976.1.S1_at--192--6151Chr05:20980062..20980086 (25 bp)
GAGGTCTGGAGTGGCGACGAGGTGC
LOC_Os05g35450
OsAffx.14976.1.S1_at--728--5771Chr05:20980047..20980071 (25 bp)
GACGAGGTGCGGGTGCGACGACAAC
LOC_Os05g35450
OsAffx.14976.1.S1_at--897--1031Chr05:20980043..20980067 (25 bp)
AGGTGCGGGTGCGACGACAACGCCA
LOC_Os05g35450
OsAffx.14976.1.S1_at--986--5611Chr05:20980028..20980052 (25 bp)
GACAACGCCAGCAGATCGGCCGCAA
LOC_Os05g35450
OsAffx.14976.1.S1_at--490--9451Chr05:20980013..20980037 (25 bp)
TCGGCCGCAACGACGTGGAGAGGTT
LOC_Os05g35450
OsAffx.14976.1.S1_at--1115--3951Chr05:20979964..20979988 (25 bp)
CGGTGACGGCGCAAGCAGATTCAGC
LOC_Os05g35450
OsAffx.14976.1.S1_at--55--8951Chr05:20979961..20979985 (25 bp)
TGACGGCGCAAGCAGATTCAGCAGT
LOC_Os05g35450
OsAffx.14976.1.S1_at--560--4591Chr05:20979956..20979980 (25 bp)
GCGCAAGCAGATTCAGCAGTGTCGA
LOC_Os05g35450
OsAffx.14976.1.S1_at--1025--5151Chr05:20979954..20979978 (25 bp)
GCAAGCAGATTCAGCAGTGTCGAGG
LOC_Os05g35450
OsAffx.14976.1.S1_at--544--7191Chr05:20979930..20979954 (25 bp)
GTCGGAGATAGCGTGTCCTGCAGCA
LOC_Os05g35450
Target Sequence 
ATCCAGCAACGGTGAGGTCTGGAGTGGCGACGAGGTGCGGGTGCGACGACAACGCCAGCAGATCGGCCGCAACGACGTGG
AGAGGTTGGGGATGACGACGAGCCGCTGGTCCGGTGACGGCGCAAGCAGATTCAGCAGTGTCGAGGTCGGAGATAGCGTG
TCCTGCAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14976.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis