Browse Element(s) Details


Os.4846.1.S1_at

Description gb:AK100059.1
DB_XREF= gi:32985268
TID=Os.4846.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.4846 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013158H21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013158H21, full insert sequence.
FL= gb:AK060658.1 gb:AK100059.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3544411/11expressed protein
LOC_Os03g532101/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35400Os.54759.1.S1_at10/115+20950583..20952855Luminal binding protein 5 precursor, putative, expressed
LOC_Os05g35400OsAffx.24785.1.S1_x_at1/115+20950583..20952855Luminal binding protein 5 precursor, putative, expressed
LOC_Os05g35410Os.13562.1.S1_at11/115+20956225..20961695Potassium channel AKT2/3, putative, expressed
LOC_Os05g35420OsAffx.14975.1.S1_at11/115+20964764..20965114hypothetical protein
LOC_Os05g35430Os.32285.1.S1_at2/115+20965255..20965815hypothetical protein
LOC_Os05g35440Os.25477.1.S1_at11/115+20966598..20971516Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
LOC_Os05g35444Os.4846.1.S1_at11/115+20972061..20973749expressed protein
LOC_Os05g35444OsAffx.1396.1.S1_x_at1/115+20972061..20973749expressed protein
LOC_Os05g35450OsAffx.14976.1.S1_at11/115+20979895..20980137hypothetical protein
LOC_Os05g35460Os.15008.1.S1_at11/115+20982245..20985211Patellin-5, putative, expressed
LOC_Os05g35470Os.5632.1.S1_a_at11/115+20995250..20996692Dienelactone hydrolase family protein, expressed
LOC_Os05g35470OsAffx.4527.1.S1_s_at11/115+20995250..20996692Dienelactone hydrolase family protein, expressed
LOC_Os05g35480Os.32600.1.S1_at9/115+20997900..21000872C2 domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4846.1.S1_at--673--8372Chr07:9154393..9154750 (25 bp)
GGCGCACGAAGGCTAGCCGATGGAG
NONE
Os.4846.1.S1_at--497--911Chr05:20973192..20973216 (25 bp)
AGGCTAGCCGATGGAGGGCGCCGGT
LOC_Os05g35444
Os.4846.1.S1_at--334--9251Chr05:20973420..20973444 (25 bp)
TCCTTTGAGCCTTGACGGATGGCTG
LOC_Os05g35444
Os.4846.1.S1_at--241--3691Chr05:20973422..20973446 (25 bp)
CTTTGAGCCTTGACGGATGGCTGCG
LOC_Os05g35444
Os.4846.1.S1_at--440--1893Chr07:2681219..2681243 (25 bp)
ACGTCGTTTTGGCACCCTCTTGCTG
NONE
Os.4846.1.S1_at--491--10872Chr07:2681227..2681251 (25 bp)
TTGGCACCCTCTTGCTGTGTGGCGA
NONE
Os.4846.1.S1_at--615--1812Chr07:2681232..2681256 (25 bp)
ACCCTCTTGCTGTGTGGCGATCTCG
NONE
Os.4846.1.S1_at--742--3752Chr05:20973492..20973516 (25 bp)
CTCTTGCTGTGTGGCGATCTCGTCT
LOC_Os05g35444
Os.4846.1.S1_at--249--1693Chr07:2681319..2681343 (25 bp)
AGCCTTCTCCCGGACTTGTGTTTAG
NONE
Os.4846.1.S1_at--773--10533Chr07:2681323..2681346 (24 bp)
TTCTCCCGGACTTGTGTTTAGGCGC
NONE
Os.4846.1.S1_at--362--3751Chr05:20973562..20973586 (25 bp)
CTCCCGGACTTGTGTTTAGGCGCTG
LOC_Os05g35444
Target Sequence 
GGCGCACGAAGGCTAGCCGATGGAGGGCGCCGGTGCAGGGGTCCCACATGTCGGCAGAGGTTGATTGGCGGTGGAGCATC
GGTGTGTCAGCCGTGGTTTCGCAGGTGGTGAGCGGCAGGTGAAAACCCAGCCCGGCCTTGGCTGGACCGACAACGATGGT
TAATTCCCCCTCCTGAGGGCGTTGTCGTGCTGTCTCGCCCCTTAAGGGTGGTTGCCGGGCAAAAGCCTAGTCCTGGCTCC
TTTGAGCCTTGACGGATGGCTGCGGCGGTTTTCCGTCGCTTCTCTTCTTGAAGACGTCGTTTTGGCACCCTCTTGCTGTG
TGGCGATCTCGTCTGTGTTCCTTTGTTGGTCTAGCGGCGGTCGGTCCGGTGCTAGCCTTCTCCCGGACTTGTGTTTAGGC
GCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4846.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis