Browse Element(s) Details


OsAffx.14975.1.S1_at

Description tigr:9633.m03296
TID=OsAffx.14975.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3542011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35390OsAffx.22848.4.S1_at2/115+20939960..20945535retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g35390OsAffx.22848.4.S1_x_at1/115+20939960..20945535retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g35390OsAffx.22848.3.S1_x_at1/115+20939960..20945535retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g35400Os.54759.1.S1_at10/115+20950583..20952855Luminal binding protein 5 precursor, putative, expressed
LOC_Os05g35400OsAffx.24785.1.S1_x_at1/115+20950583..20952855Luminal binding protein 5 precursor, putative, expressed
LOC_Os05g35410Os.13562.1.S1_at11/115+20956225..20961695Potassium channel AKT2/3, putative, expressed
LOC_Os05g35420OsAffx.14975.1.S1_at11/115+20964764..20965114hypothetical protein
LOC_Os05g35430Os.32285.1.S1_at2/115+20965255..20965815hypothetical protein
LOC_Os05g35440Os.25477.1.S1_at11/115+20966598..20971516Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
LOC_Os05g35444Os.4846.1.S1_at11/115+20972061..20973749expressed protein
LOC_Os05g35444OsAffx.1396.1.S1_x_at1/115+20972061..20973749expressed protein
LOC_Os05g35450OsAffx.14976.1.S1_at11/115+20979895..20980137hypothetical protein
LOC_Os05g35460Os.15008.1.S1_at11/115+20982245..20985211Patellin-5, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14975.1.S1_at--1153--10834Chr06:24921754..24921777 (24 bp)
TTGGTGAGGCCTACGCCGTTCGCCG
NONE
OsAffx.14975.1.S1_at--277--4551Chr05:20964982..20965006 (25 bp)
GCCCTCGCCGCTTGGAGATGAAAAA
LOC_Os05g35420
OsAffx.14975.1.S1_at--381--4512Chr05:20964988..20965012 (25 bp)
GCCGCTTGGAGATGAAAAAGCCCAT
LOC_Os05g35420
OsAffx.14975.1.S1_at--565--5532Chr05:20965001..20965025 (25 bp)
GAAAAAGCCCATGATCTTGATATCT
LOC_Os05g35420
OsAffx.14975.1.S1_at--145--6433Chr05:20965013..20965037 (25 bp)
GATCTTGATATCTTGCCTGTACAAT
LOC_Os05g35420
OsAffx.14975.1.S1_at--313--9593Chr05:20965015..20965039 (25 bp)
TCTTGATATCTTGCCTGTACAATTT
LOC_Os05g35420
OsAffx.14975.1.S1_at--881--7032Chr05:20965031..20965055 (25 bp)
GTACAATTTGTCAAGCTGAGTGCAA
LOC_Os05g35420
OsAffx.14975.1.S1_at--1138--3192Chr05:20965042..20965066 (25 bp)
CAAGCTGAGTGCAAAGTTAAGTTCT
LOC_Os05g35420
OsAffx.14975.1.S1_at--903--7332Chr05:20965050..20965074 (25 bp)
GTGCAAAGTTAAGTTCTCCACTAAT
LOC_Os05g35420
OsAffx.14975.1.S1_at--118--5132Chr05:20965052..20965076 (25 bp)
GCAAAGTTAAGTTCTCCACTAATTA
LOC_Os05g35420
OsAffx.14975.1.S1_at--463--10492Chr05:20965058..20965082 (25 bp)
TTAAGTTCTCCACTAATTAAAGAAT
LOC_Os05g35420
Target Sequence 
TTGGTGAGGCCTACGCCGTTCGCCGCGCTCTCGGCCTCCACGTGCCCGGTGGCGATGGCCTGCTGCGCCGCCTCCACCGT
CGTGTGGAACCTGAACGAGCCGCCGTGTCCCCGCCCTCGCCGCTTGGAGATGAAAAAGCCCATGATCTTGATATCTTGCC
TGTACAATTTGTCAAGCTGAGTGCAAAGTTAAGTTCTCCACTAATTAAAGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14975.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis