Browse Element(s) Details


Os.13562.1.S1_at

Description gb:AK061594.1
DB_XREF= gi:32971612
TID=Os.13562.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13562 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-023-E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-023-E11, full insert sequence.
FL= gb:AK061594.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3541011/11Potassium channel AKT2/3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35390OsAffx.22848.4.S1_at2/115+20939960..20945535retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g35390OsAffx.22848.4.S1_x_at1/115+20939960..20945535retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g35390OsAffx.22848.3.S1_x_at1/115+20939960..20945535retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g35400Os.54759.1.S1_at10/115+20950583..20952855Luminal binding protein 5 precursor, putative, expressed
LOC_Os05g35400OsAffx.24785.1.S1_x_at1/115+20950583..20952855Luminal binding protein 5 precursor, putative, expressed
LOC_Os05g35410Os.13562.1.S1_at11/115+20956225..20961695Potassium channel AKT2/3, putative, expressed
LOC_Os05g35420OsAffx.14975.1.S1_at11/115+20964764..20965114hypothetical protein
LOC_Os05g35430Os.32285.1.S1_at2/115+20965255..20965815hypothetical protein
LOC_Os05g35440Os.25477.1.S1_at11/115+20966598..20971516Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
LOC_Os05g35444Os.4846.1.S1_at11/115+20972061..20973749expressed protein
LOC_Os05g35444OsAffx.1396.1.S1_x_at1/115+20972061..20973749expressed protein
LOC_Os05g35450OsAffx.14976.1.S1_at11/115+20979895..20980137hypothetical protein
LOC_Os05g35460Os.15008.1.S1_at11/115+20982245..20985211Patellin-5, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009860biological_processpollen tube growth
GO:0042391biological_processregulation of membrane potential
GO:0005886cellular_componentplasma membrane
GO:0005242molecular_functioninward rectifier potassium channel activity
GO:0005267molecular_functionpotassium channel activity
GO:0030551molecular_functioncyclic nucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13562.1.S1_at--88--7111Chr05:20956861..20956885 (25 bp)
GTCAGAAACCGTAGCTCAGAAGCCG
LOC_Os05g35410
Os.13562.1.S1_at--990--1431Chr05:20956844..20956868 (25 bp)
AGAAGCCGGCAAGCTGATCAACCTG
LOC_Os05g35410
Os.13562.1.S1_at--1053--10751Chr05:20956621..20956645 (25 bp)
TTGACTCGATCGACGTGATCCGGGA
LOC_Os05g35410
Os.13562.1.S1_at--359--6371Chr05:20956605..20956629 (25 bp)
GATCCGGGACAACGATAAGCTGTTC
LOC_Os05g35410
Os.13562.1.S1_at--533--8791Chr05:20956585..20956609 (25 bp)
TGTTCATAGTGACCGAGGAGCATAT
LOC_Os05g35410
Os.13562.1.S1_at--450--5651Chr05:20956560..20956584 (25 bp)
GACAGCAGTAGCATCGATGGACTCG
LOC_Os05g35410
Os.13562.1.S1_at--1048--5711Chr05:20956541..20956565 (25 bp)
GACTCGGTGTCTGGATCATAGCATA
LOC_Os05g35410
Os.13562.1.S1_at--566--5231Chr05:20956504..20956528 (25 bp)
GAATAAGGCCTTGTCCAGCTTGGAG
LOC_Os05g35410
Os.13562.1.S1_at--185--7731Chr05:20956446..20956470 (25 bp)
GGTGTAAAACTAGTCTCCCCAATCT
LOC_Os05g35410
Os.13562.1.S1_at--522--9291Chr05:20956431..20956455 (25 bp)
TCCCCAATCTGTTCCTTTTAGGATT
LOC_Os05g35410
Os.13562.1.S1_at--1018--351Chr05:20956390..20956414 (25 bp)
ATCAAGTTTTCTATTGGCGACAATC
LOC_Os05g35410
Target Sequence 
GTCAGAAACCGTAGCTCAGAAGCCGGCAAGCTGATCAACCTGCCCGGCACCNATGGNAAGAATTCAGAATCATCATAGAG
GAGAAACTGAAAGTCGACGCGAGGAAGACNCTGATCATGAACGACGAAGGAGCGGAGATTGACTCGATCGACGTGATCCG
GGACAACGATAAGCTGTTCATAGTGACCGAGGAGCATATGACAGCAGTAGCATCGATGGACTCGGTGTCTGGATCATAGC
ATATTCGAGTTTGCTGAATAAGGCCTTGTCCAGCTTGGAGGGATTTGAGTGGGAATGTTTTTGCATCACAATAGGTGTAA
AACTAGTCTCCCCAATCTGTTCCTTTTAGGATTAACCGAACAAAGCCTAATCAAGTTTTCTATTGGCGACAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13562.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis