Browse Element(s) Details


Os.5632.1.S1_a_at

Description gb:AK058688.1
DB_XREF= gi:32968706
TID=Os.5632.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.5632 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013089B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-019-A12, full insert sequence.
FL= gb:AK058688.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3547011/11Dienelactone hydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35440Os.25477.1.S1_at11/115+20966598..20971516Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
LOC_Os05g35444Os.4846.1.S1_at11/115+20972061..20973749expressed protein
LOC_Os05g35444OsAffx.1396.1.S1_x_at1/115+20972061..20973749expressed protein
LOC_Os05g35450OsAffx.14976.1.S1_at11/115+20979895..20980137hypothetical protein
LOC_Os05g35460Os.15008.1.S1_at11/115+20982245..20985211Patellin-5, putative, expressed
LOC_Os05g35470Os.5632.1.S1_a_at11/115+20995250..20996692Dienelactone hydrolase family protein, expressed
LOC_Os05g35470OsAffx.4527.1.S1_s_at11/115+20995250..20996692Dienelactone hydrolase family protein, expressed
LOC_Os05g35480Os.32600.1.S1_at9/115+20997900..21000872C2 domain-containing protein, putative, expressed
LOC_Os05g35490OsAffx.4528.1.S1_at11/115+21007912..21008274hypothetical protein
LOC_Os05g35500Os.10175.1.S1_at11/115+21016108..21017402MYB6, putative, expressed
LOC_Os05g35500Os.57514.1.S1_x_at2/115+21016108..21017402MYB6, putative, expressed
LOC_Os05g35510OsAffx.27178.1.S1_at11/115+21020180..21023083hypothetical protein
LOC_Os05g35510OsAffx.25135.2.S1_x_at1/115+21020180..21023083hypothetical protein
LOC_Os05g35510OsAffx.8277.2.S1_at1/115+21020180..21023083hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5632.1.S1_a_at--1117--8831Chr05:20995482..20995506 (25 bp)
TGATCATCCTTGTTCCGTTTCAAAC
LOC_Os05g35470
Os.5632.1.S1_a_at--1026--10651Chr05:20995470..20995494 (25 bp)
TTCCGTTTCAAACTGTTCGCTCGTA
LOC_Os05g35470
Os.5632.1.S1_a_at--218--2571Chr05:20995460..20995484 (25 bp)
AACTGTTCGCTCGTAGACATTGGAC
LOC_Os05g35470
Os.5632.1.S1_a_at--552--4131Chr05:20995453..20995477 (25 bp)
CGCTCGTAGACATTGGACAGGGTTC
LOC_Os05g35470
Os.5632.1.S1_a_at--645--5651Chr05:20995438..20995462 (25 bp)
GACAGGGTTCTATTTATACTATTGA
LOC_Os05g35470
Os.5632.1.S1_a_at--581--3691Chr05:20995420..20995444 (25 bp)
CTATTGACTATGTTACTGCTTGTGT
LOC_Os05g35470
Os.5632.1.S1_a_at--737--5111Chr05:20995384..20995408 (25 bp)
GCACATGGGCATTGCATTGCACTTG
LOC_Os05g35470
Os.5632.1.S1_a_at--1152--7051Chr05:20995338..20995362 (25 bp)
GTAAGTTCAATAGTTTCGTTTCATG
LOC_Os05g35470
Os.5632.1.S1_a_at--931--9391Chr05:20995323..20995347 (25 bp)
TCGTTTCATGTTTTGGAGTCGGAGC
LOC_Os05g35470
Os.5632.1.S1_a_at--762--8031Chr05:20995309..20995333 (25 bp)
GGAGTCGGAGCTTTCAATGTGTCAC
LOC_Os05g35470
Os.5632.1.S1_a_at--902--3671Chr05:20995299..20995323 (25 bp)
CTTTCAATGTGTCACTCTGGCTGTG
LOC_Os05g35470
Target Sequence 
TGATCATCCTTGTTCCGTTTCAAACTGTTCGCTCGTAGACATTGGACAGGGTTCTATTTATACTATTGACTATGTTACTG
CTTGTGTAAATGTGTAATGCACATGGGCATTGCATTGCACTTGAGAAATGAGTAGTTGAGTATTGTAAGTTCAATAGTTT
CGTTTCATGTTTTGGAGTCGGAGCTTTCAATGTGTCACTCTGGCTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5632.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis