Browse Element(s) Details


OsAffx.4528.1.S1_at

Description tigr:9633.m03304
TID=OsAffx.4528.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3549011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35460Os.15008.1.S1_at11/115+20982245..20985211Patellin-5, putative, expressed
LOC_Os05g35470Os.5632.1.S1_a_at11/115+20995250..20996692Dienelactone hydrolase family protein, expressed
LOC_Os05g35470OsAffx.4527.1.S1_s_at11/115+20995250..20996692Dienelactone hydrolase family protein, expressed
LOC_Os05g35480Os.32600.1.S1_at9/115+20997900..21000872C2 domain-containing protein, putative, expressed
LOC_Os05g35490OsAffx.4528.1.S1_at11/115+21007912..21008274hypothetical protein
LOC_Os05g35500Os.10175.1.S1_at11/115+21016108..21017402MYB6, putative, expressed
LOC_Os05g35500Os.57514.1.S1_x_at2/115+21016108..21017402MYB6, putative, expressed
LOC_Os05g35510OsAffx.27178.1.S1_at11/115+21020180..21023083hypothetical protein
LOC_Os05g35510OsAffx.25135.2.S1_x_at1/115+21020180..21023083hypothetical protein
LOC_Os05g35510OsAffx.8277.2.S1_at1/115+21020180..21023083hypothetical protein
LOC_Os05g35520Os.20865.1.S1_at11/115+21029401..21034212deoxynucleoside kinase family, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4528.1.S1_at--469--1991Chr05:21008170..21008194 (25 bp)
ACTCCAGAAGAGAGCCGGAGTTGTC
LOC_Os05g35490
OsAffx.4528.1.S1_at--68--1351Chr05:21008162..21008186 (25 bp)
AGAGAGCCGGAGTTGTCGGGCGTCG
LOC_Os05g35490
OsAffx.4528.1.S1_at--306--1871Chr05:21008106..21008130 (25 bp)
ACGAGGAGGGTTGTGCATGGCGGAT
LOC_Os05g35490
OsAffx.4528.1.S1_at--1125--7992Chr09:12878600..12878623 (24 bp)
GGATGGAGATCGGTACAGCCTGCTC
NONE
OsAffx.4528.1.S1_at--263--6251Chr05:21008029..21008053 (25 bp)
GATGGAGATCGGTACAGCCTGCTCA
LOC_Os05g35490
OsAffx.4528.1.S1_at--983--832Chr09:12878602..12878623 (22 bp)
ATGGAGATCGGTACAGCCTGCTCAT
NONE
OsAffx.4528.1.S1_at--633--8552Chr09:12878603..12878623 (21 bp)
TGGAGATCGGTACAGCCTGCTCATC
NONE
OsAffx.4528.1.S1_at--284--8052Chr09:12878604..12878623 (20 bp)
GGAGATCGGTACAGCCTGCTCATCC
NONE
OsAffx.4528.1.S1_at--984--1594Chr09:12878709..12878824 (25 bp)
AGCTGCCTCCTCTGTTCACCGAGAG
NONE
OsAffx.4528.1.S1_at--1094--9174Chr09:12878712..12878826 (24 bp)
TGCCTCCTCTGTTCACCGAGAGAGC
NONE
OsAffx.4528.1.S1_at--739--3811Chr05:21007942..21007966 (25 bp)
CTCCTCTGTTCACCGAGAGAGCAAG
LOC_Os05g35490
Target Sequence 
ACTCCAGAAGAGAGCCGGAGTTGTCGGGCGTCGTCGTCACGAGACGAGGAGGCGGTGGCGTGAGACGAGGAGGGTTGTGC
ATGGCGGATGGGTGCTCACTGGGATGCGGCGGAAGCAGCGCCCCCCTGCTCAGCTCGCGGGGATGGAGATCGGTACAGCC
TGCTCATCCCGCCGTTGGCCTCAGCTCCTCACCCGCCGTCCGCAGCCGCCTTCGCGCCCGCCAGCTGCCTCCTCTGTTCA
CCGAGAGAGCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4528.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis