Browse Element(s) Details


OsAffx.27178.1.S1_at

Description tigr:9633.m03306
TID=OsAffx.27178.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3551011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35470Os.5632.1.S1_a_at11/115+20995250..20996692Dienelactone hydrolase family protein, expressed
LOC_Os05g35470OsAffx.4527.1.S1_s_at11/115+20995250..20996692Dienelactone hydrolase family protein, expressed
LOC_Os05g35480Os.32600.1.S1_at9/115+20997900..21000872C2 domain-containing protein, putative, expressed
LOC_Os05g35490OsAffx.4528.1.S1_at11/115+21007912..21008274hypothetical protein
LOC_Os05g35500Os.10175.1.S1_at11/115+21016108..21017402MYB6, putative, expressed
LOC_Os05g35500Os.57514.1.S1_x_at2/115+21016108..21017402MYB6, putative, expressed
LOC_Os05g35510OsAffx.27178.1.S1_at11/115+21020180..21023083hypothetical protein
LOC_Os05g35510OsAffx.25135.2.S1_x_at1/115+21020180..21023083hypothetical protein
LOC_Os05g35510OsAffx.8277.2.S1_at1/115+21020180..21023083hypothetical protein
LOC_Os05g35520Os.20865.1.S1_at11/115+21029401..21034212deoxynucleoside kinase family, putative, expressed
LOC_Os05g35530Os.6302.1.S1_x_at10/115+21037631..21043658expressed protein
LOC_Os05g35530Os.6302.2.S1_at8/115+21037631..21043658expressed protein
LOC_Os05g35540Os.10470.1.S1_s_at10/115+21043643..21046459expressed protein
LOC_Os05g35540Os.18211.1.S1_at1/115+21043643..21046459expressed protein
LOC_Os05g35550OsAffx.4530.1.S1_at11/115+21046706..21047002hypothetical protein
LOC_Os05g35550OsAffx.4530.1.S1_x_at11/115+21046706..21047002hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27178.1.S1_at--295--6391Chr05:21020236..21020260 (25 bp)
GATCGACCTCCATCAGCAGGGCGGT
LOC_Os05g35510
OsAffx.27178.1.S1_at--544--2593Chr05:21020270..21020294 (25 bp)
AACGACGTGCTTGTACGAGCGGACC
LOC_Os05g35510
OsAffx.27178.1.S1_at--24--7871Chr05:21020637..21021015 (25 bp)
GGTATTACCTTCTACGTGATCTGGA
LOC_Os05g35510
OsAffx.27178.1.S1_at--461--4151Chr05:21022598..21022622 (25 bp)
CGCGTCTGTCTTTTCAATTACTGTA
LOC_Os05g35510
OsAffx.27178.1.S1_at--269--10571Chr05:21022623..21022647 (25 bp)
TTCTTCATTGGCATTGCTCGGTCAA
LOC_Os05g35510
OsAffx.27178.1.S1_at--166--71Chr05:21022635..21022659 (25 bp)
ATTGCTCGGTCAACGGAGTCGTGAA
LOC_Os05g35510
OsAffx.27178.1.S1_at--162--5211Chr05:21022661..21022685 (25 bp)
GAATTTGGAAGTCTCAGCGACCACA
LOC_Os05g35510
OsAffx.27178.1.S1_at--105--1651Chr05:21022676..21022700 (25 bp)
AGCGACCACATATCTCATGAGACGG
LOC_Os05g35510
OsAffx.27178.1.S1_at--682--391Chr05:21022692..21022716 (25 bp)
ATGAGACGGAATCTTCCGGTTCCGG
LOC_Os05g35510
OsAffx.27178.1.S1_at--661--1291Chr05:21022746..21022770 (25 bp)
AGATGCCTGCAACAACTCTGCAGCA
LOC_Os05g35510
OsAffx.27178.1.S1_at--22--1991Chr05:21023009..21023030 (22 bp)
ACTGCTTCGTTGCTCGTGCAGAAGA
LOC_Os05g35510
Target Sequence 
GATCGACCTCCATCAGCAGGGCGGTGAAGCCGTCAACGACGTGCTTGTACGAGCGGACCAGCCGCGGCTTGCCATCGGCG
GTGGTGTTGCCGGGGAGGAAGGGTATCAGGACCTGATACCTCGCAGGTATTACCTTCTACGTGATCTGGACGGTGCTCCA
CCCCACGCGCGCGAATCCAGCGGCGGCGCGGCGGATCTGGTGCGGGCAACGGTGGGAGGCGTGGTGGCGGGCGCCGATCG
GGAGTGGCTGAGCGGGCGGGCGGGCGTCCTAGCGCTCCGCGTCTGTCTTTTCAATTACTGTATTCTTCATTGGCATTGCT
CGGTCAACGGAGTCGTGAATGAATTTGGAAGTCTCAGCGACCACATATCTCATGAGACGGAATCTTCCGGTTCCGGCGAC
CAACCTGCATCTGCAGGCAGGCAGCAGATGCCTGCAACAACTCTGCAGCAGACGACTGCTTCGTTGCTCGTGCAGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27178.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis