Browse Element(s) Details


Os.23672.1.S1_at

Description gb:AK121485.1
DB_XREF= gi:37991108
TID=Os.23672.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23672 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023150B15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023150B15, full insert sequence.
FL= gb:AK121485.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3557011/11Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35520Os.20865.1.S1_at11/115+21029401..21034212deoxynucleoside kinase family, putative, expressed
LOC_Os05g35530Os.6302.1.S1_x_at10/115+21037631..21043658expressed protein
LOC_Os05g35530Os.6302.2.S1_at8/115+21037631..21043658expressed protein
LOC_Os05g35540Os.10470.1.S1_s_at10/115+21043643..21046459expressed protein
LOC_Os05g35540Os.18211.1.S1_at1/115+21043643..21046459expressed protein
LOC_Os05g35550OsAffx.4530.1.S1_at11/115+21046706..21047002hypothetical protein
LOC_Os05g35550OsAffx.4530.1.S1_x_at11/115+21046706..21047002hypothetical protein
LOC_Os05g35560OsAffx.14977.1.S1_at11/115+21048639..21049271hypothetical protein
LOC_Os05g35570Os.23672.1.S1_at11/115+21052072..21055429Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os05g35580Os.11493.1.A1_at11/115+21058192..21060267Amidophosphoribosyltransferase, chloroplast precursor, putative, expressed
LOC_Os05g35594OsAffx.4531.1.S1_s_at11/115+21061148..21065177POT family protein, expressed
LOC_Os05g35594Os.52604.1.A1_at10/115+21061148..21065177POT family protein, expressed
LOC_Os05g35594OsAffx.22811.1.S1_at3/115+21061148..21065177POT family protein, expressed
LOC_Os05g35594OsAffx.22005.1.S1_x_at1/115+21061148..21065177POT family protein, expressed
LOC_Os05g35610NANA5+21075248..21076065hypothetical protein
LOC_Os05g35620OsAffx.27180.1.S1_x_at11/115+21078150..21078560hypothetical protein
LOC_Os05g35620OsAffx.27180.1.S1_at11/115+21078150..21078560hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23672.1.S1_at--532--711Chr05:21052557..21052581 (25 bp)
ATGATCATGCTGCATCCAAGCCAAC
LOC_Os05g35570
Os.23672.1.S1_at--753--971Chr05:21052523..21052547 (25 bp)
AGGAGCATCGAAGCAGCCTGGCTTT
LOC_Os05g35570
Os.23672.1.S1_at--679--4531Chr05:21052493..21052517 (25 bp)
GCCCATTTGCACGAAACAAGGTCTT
LOC_Os05g35570
Os.23672.1.S1_at--1105--891Chr05:21052393..21052417 (25 bp)
AGGCTGCTCTTGCTAGTTTGACGGA
LOC_Os05g35570
Os.23672.1.S1_at--1159--2731Chr05:21052298..21052322 (25 bp)
AAGAAGCTAGATCTACCCTCTTTCG
LOC_Os05g35570
Os.23672.1.S1_at--296--751Chr05:21052255..21052279 (25 bp)
ATGTAGCCTACTAGCGGTTGCTCAC
LOC_Os05g35570
Os.23672.1.S1_at--859--6671Chr05:21052239..21052263 (25 bp)
GTTGCTCACCATATTAGCGCTGCAG
LOC_Os05g35570
Os.23672.1.S1_at--77--6771Chr05:21052198..21052222 (25 bp)
GTTACAGTTCACATTGGCATAGCAT
LOC_Os05g35570
Os.23672.1.S1_at--552--9851Chr05:21052153..21052177 (25 bp)
TACAGTGCACATTAGCTCTTTAAGC
LOC_Os05g35570
Os.23672.1.S1_at--970--9791Chr05:21052133..21052157 (25 bp)
TAAGCTTTTCTGCTGCTGTCCTATT
LOC_Os05g35570
Os.23672.1.S1_at--1082--8711Chr05:21052096..21052120 (25 bp)
TGTAATAATTACTGTTCCCGTGCAA
LOC_Os05g35570
Target Sequence 
ATGATCATGCTGCATCCAAGCCAACACCCTCCAAAGGAGCATCGAAGCAGCCTGGCTTTTTTTNGCCCATTTGCACGAAA
CAAGGTCTTNTGCTTGNTTATCAAGGTGGTGTGACATGATCTGTTATGTGNNTCTGTTCCTTTGATTCGAGGAGCAAGTT
TATGAGGCTGCTCTTGCTAGTTTGACGGATGTTTTTTTGGCTTTTAGTTTTTGAGGTTTGTCTGTTGATGCATGTATATT
GTACAGTCTAAATGAATGTAAGAAGCTAGATCTACCCTCTTTCGGTGAGGTTGAAACCATTCATGTAGCCTACTAGCGGT
TGCTCACCATATTAGCGCTGCAGAGTGTGAAACTCTGCTGTTACAGTTCACATTGGCATAGCATTGAGAGTCTTGGTATT
TACTTACAGTGCACATTAGCTCTTTAAGCTTTTCTGCTGCTGTCCTATTCAACTCCTGACATGTAATAATTACTGTTCCC
GTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23672.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis