Browse Element(s) Details


OsAffx.4533.1.S1_at

Description tigr:9633.m03323
TID=OsAffx.4533.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to oligopeptide transporter-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3567010/11oligopeptide transporter, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35630OsAffx.4532.1.S1_at11/115+21083529..21083978hypothetical protein
LOC_Os05g35650Os.53707.1.S1_x_at1/115+21088676..21103104POT family protein, expressed
LOC_Os05g35660OsAffx.27975.1.S1_at10/115+21103583..21104337hypothetical protein
LOC_Os05g35670OsAffx.4533.1.S1_at10/115+21107614..21108377oligopeptide transporter, putative
LOC_Os05g35680OsAffx.27182.1.S1_at11/115+21111539..21112761hypothetical protein
LOC_Os05g35690Os.17900.1.S1_s_at11/115+21114928..21115803Gibberellin-regulated protein 2 precursor, putative, expressed
LOC_Os05g35700NANA5+21116650..21117224hypothetical protein
LOC_Os05g35710Os.8839.1.S1_at11/115+21118679..21121719expressed protein
LOC_Os05g35710Os.8839.2.S1_at11/115+21118679..21121719expressed protein
LOC_Os05g35710Os.8839.2.S1_x_at11/115+21118679..21121719expressed protein
LOC_Os05g35720Os.18304.1.S1_at9/115+21122681..21124515TMEM18 protein, putative, expressed
LOC_Os05g35730Os.32965.1.S1_at11/115+21124736..21131244hydrolase, alpha/beta fold family protein, expressed
LOC_Os05g35740Os.9669.1.S1_at11/115+21131630..21133724Pi starvation-induced protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4533.1.S1_at--1104--3931Chr05:21108167..21108310 (25 bp)
CGGCTGGAGCGGTGGAGATCGCGGA
LOC_Os05g35670
OsAffx.4533.1.S1_at--509--3931Chr05:21108062..21108086 (25 bp)
CGGCGGCCATCAACGCCTGGAACGG
LOC_Os05g35670
OsAffx.4533.1.S1_at--1051--9331Chr05:21107709..21107982 (25 bp)
TCGCTGCTCTACATCCTGATATTTG
LOC_Os05g35670
OsAffx.4533.1.S1_at--492--4771Chr05:21107707..21107980 (25 bp)
GCTGCTCTACATCCTGATATTTGTT
LOC_Os05g35670
OsAffx.4533.1.S1_at--205--4811NONE
GCTCTACATCCTGATATTTGTTAAG
NONE
OsAffx.4533.1.S1_at--585--2091Chr05:21107699..21107972 (25 bp)
ACATCCTGATATTTGTTAAGCCAGT
LOC_Os05g35670
OsAffx.4533.1.S1_at--513--3871Chr05:21107694..21107716 (23 bp)
CTGATATTTGTTAAGCCAGTAGCAG
LOC_Os05g35670
OsAffx.4533.1.S1_at--60--10031Chr05:21107666..21107690 (25 bp)
TAGCACTGAGAGTTATTAGGAGCCA
LOC_Os05g35670
OsAffx.4533.1.S1_at--1094--6051Chr05:21107657..21107681 (25 bp)
GAGTTATTAGGAGCCAGATCGCAAA
LOC_Os05g35670
OsAffx.4533.1.S1_at--560--10211Chr05:21107653..21107677 (25 bp)
TATTAGGAGCCAGATCGCAAAAATT
LOC_Os05g35670
OsAffx.4533.1.S1_at--881--8071Chr05:21107648..21107672 (25 bp)
GGAGCCAGATCGCAAAAATTATTCG
LOC_Os05g35670
Target Sequence 
CGGCTGGAGCGGTGGAGATCGCGGAGCGGTTCGCGTTCTACGGGGTGTCGGCGAACCTGATCACCTACCTGACGGGCTCG
CTCGGGGAAGGGAACGCGGCGGCGGCGGCGGCCATCAACGCCTGGAACGGCGTCTCCCAGCTGCTGCCGCTGCTCGGCGG
CGCCCTCGCCGACTCCTGGCTCGGCCGCTACCGCACCATCCTCCTCGCCTCGCTGCTCTACATCCTGATATTTGTTAAGC
CAGTAGCAGCTGTAGCACTGAGAGTTATTAGGAGCCAGATCGCAAAAATTATTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4533.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis