Browse Element(s) Details


Os.8839.2.S1_x_at

Description gb:AK071117.1
DB_XREF= gi:32981140
TID=Os.8839.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8839 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023004C23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023080D08, full insert sequence.
FL= gb:AK071117.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3571011/11expressed protein
LOC_Os11g197201/11recA protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35650Os.53707.1.S1_x_at1/115+21088676..21103104POT family protein, expressed
LOC_Os05g35660OsAffx.27975.1.S1_at10/115+21103583..21104337hypothetical protein
LOC_Os05g35670OsAffx.4533.1.S1_at10/115+21107614..21108377oligopeptide transporter, putative
LOC_Os05g35680OsAffx.27182.1.S1_at11/115+21111539..21112761hypothetical protein
LOC_Os05g35690Os.17900.1.S1_s_at11/115+21114928..21115803Gibberellin-regulated protein 2 precursor, putative, expressed
LOC_Os05g35700NANA5+21116650..21117224hypothetical protein
LOC_Os05g35710Os.8839.1.S1_at11/115+21118679..21121719expressed protein
LOC_Os05g35710Os.8839.2.S1_at11/115+21118679..21121719expressed protein
LOC_Os05g35710Os.8839.2.S1_x_at11/115+21118679..21121719expressed protein
LOC_Os05g35720Os.18304.1.S1_at9/115+21122681..21124515TMEM18 protein, putative, expressed
LOC_Os05g35730Os.32965.1.S1_at11/115+21124736..21131244hydrolase, alpha/beta fold family protein, expressed
LOC_Os05g35740Os.9669.1.S1_at11/115+21131630..21133724Pi starvation-induced protein, putative, expressed
LOC_Os05g35750Os.35344.18.S1_x_at10/115+21135933..21138775hypothetical protein
LOC_Os05g35750Os.35344.3.S1_x_at9/115+21135933..21138775hypothetical protein
LOC_Os05g35750OsAffx.22940.5.S1_at7/115+21135933..21138775hypothetical protein
LOC_Os05g35750OsAffx.22940.5.S1_x_at5/115+21135933..21138775hypothetical protein
LOC_Os05g35760OsAffx.27184.1.S1_at11/115+21141660..21143541Serine/threonine-protein kinase SAPK7, putative
LOC_Os05g35760Os.44554.1.A1_at1/115+21141660..21143541Serine/threonine-protein kinase SAPK7, putative
LOC_Os05g35760Os.56292.1.S1_x_at1/115+21141660..21143541Serine/threonine-protein kinase SAPK7, putative
LOC_Os05g35770OsAffx.27185.1.S1_at11/115+21146238..21147844Serine/threonine-protein kinase SAPK9, putative

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Gene Ontology Classification
GO idTypeName
GO:0006281biological_processDNA repair
GO:0006310biological_processDNA recombination
GO:0009432biological_processSOS response
GO:0003677molecular_functionDNA binding
GO:0008094molecular_functionDNA-dependent ATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8839.2.S1_x_at--445--7631Chr05:21119499..21119523 (25 bp)
GGGACTCCATCTTCGACAAGAACTT
LOC_Os05g35710
Os.8839.2.S1_x_at--1033--5631Chr05:21119552..21119576 (25 bp)
GACACGCCGCTCCTGATGAAGGAAG
LOC_Os05g35710
Os.8839.2.S1_x_at--300--7431Chr05:21119585..21119609 (25 bp)
GTGTTCAAGTTCTACGCGAGCGGGA
LOC_Os05g35710
Os.8839.2.S1_x_at--569--8191Chr05:21119697..21119721 (25 bp)
GGAAGGACACCATCACGTTCGAGGT
LOC_Os05g35710
Os.8839.2.S1_x_at--645--6191Chr05:21119732..21119756 (25 bp)
GAGGAAGCCATGGACCACGTCATGT
LOC_Os05g35710
Os.8839.2.S1_x_at--1--731Chr05:21119912..21119936 (25 bp)
ATGATTACTGAAGCCGTGCTGGACC
LOC_Os05g35710
Os.8839.2.S1_x_at--1055--7392Chr05:21119939..21119963 (25 bp)
GTGATGATTTAACCTGCTTACTTAT
LOC_Os05g35710
Os.8839.2.S1_x_at--1124--10431Chr05:21119966..21119990 (25 bp)
TTAGAATTGCTGTTTTTAGCTTCGG
LOC_Os05g35710
Os.8839.2.S1_x_at--242--10451Chr05:21119981..21120005 (25 bp)
TTAGCTTCGGTGGTACTGGGTAAAT
LOC_Os05g35710
Os.8839.2.S1_x_at--116--3871Chr05:21119996..21120020 (25 bp)
CTGGGTAAATGGTTCTTCTGGTAAG
LOC_Os05g35710
Os.8839.2.S1_x_at--324--6151Chr05:21120040..21120064 (25 bp)
GAGGTGTCCTGTTGATGTTGATTCT
LOC_Os05g35710
Target Sequence 
GGGACTCCATCTTCGACAAGAACTTCAGCCTCCTCGGCACCGGCGACGGCAAGGACACGCCGCTCCTGATGAAGGAAGGG
CAGGACGTGTTCAAGTTCTACGCGAGCGGGAGGCGGTACTGCCAGGGGATGCTCGCCACCATGGAGATGCGCGCGCGGCA
CGACCTGCTGTCCAAGCTGGTGGAGCTGGTGTTCCCCAGGAAGGACACCATCACGTTCGAGGTGGTGATGAACGAGGAAG
CCATGGACCACGTCATGTTGGCCGTGGCGAGGAAGAAGGCGGCCAAGACGATGCAGAAGGAGGAGAGGGATCTGCAGAAA
TTTGCCGGGGTTCTGACCTCGGCACCCGCCGGGAGGAGATGGGTTGCGGATGAGCTTGCGGTAGTGGCCGAGTCAAAGGA
GGTTGCTGGGGATATGATTACTGAAGCCGTGCTGGACCAGGTGATGATTTAACCTGCTTACTTATTTTTAGAATTGCTGT
TTTTAGCTTCGGTGGTACTGGGTAAATGGTTCTTCTGGTAAGATTGTACAGATGATATAGTGAGGTGTCCTGTTGATGTT
GATTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8839.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis