Browse Element(s) Details


OsAffx.27182.1.S1_at

Description tigr:9633.m03324
TID=OsAffx.27182.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3568011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35650Os.53707.1.S1_x_at1/115+21088676..21103104POT family protein, expressed
LOC_Os05g35660OsAffx.27975.1.S1_at10/115+21103583..21104337hypothetical protein
LOC_Os05g35670OsAffx.4533.1.S1_at10/115+21107614..21108377oligopeptide transporter, putative
LOC_Os05g35680OsAffx.27182.1.S1_at11/115+21111539..21112761hypothetical protein
LOC_Os05g35690Os.17900.1.S1_s_at11/115+21114928..21115803Gibberellin-regulated protein 2 precursor, putative, expressed
LOC_Os05g35700NANA5+21116650..21117224hypothetical protein
LOC_Os05g35710Os.8839.1.S1_at11/115+21118679..21121719expressed protein
LOC_Os05g35710Os.8839.2.S1_at11/115+21118679..21121719expressed protein
LOC_Os05g35710Os.8839.2.S1_x_at11/115+21118679..21121719expressed protein
LOC_Os05g35720Os.18304.1.S1_at9/115+21122681..21124515TMEM18 protein, putative, expressed
LOC_Os05g35730Os.32965.1.S1_at11/115+21124736..21131244hydrolase, alpha/beta fold family protein, expressed
LOC_Os05g35740Os.9669.1.S1_at11/115+21131630..21133724Pi starvation-induced protein, putative, expressed
LOC_Os05g35750Os.35344.18.S1_x_at10/115+21135933..21138775hypothetical protein
LOC_Os05g35750Os.35344.3.S1_x_at9/115+21135933..21138775hypothetical protein
LOC_Os05g35750OsAffx.22940.5.S1_at7/115+21135933..21138775hypothetical protein
LOC_Os05g35750OsAffx.22940.5.S1_x_at5/115+21135933..21138775hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27182.1.S1_at--309--8731Chr05:21112505..21112529 (25 bp)
TGTCTAGCCCTTTCACAGTGCAAGT
LOC_Os05g35680
OsAffx.27182.1.S1_at--813--2131Chr05:21112491..21112515 (25 bp)
ACAGTGCAAGTTCGTGGCGCGTTAC
LOC_Os05g35680
OsAffx.27182.1.S1_at--669--9411Chr05:21112480..21112504 (25 bp)
TCGTGGCGCGTTACCTGGTCTACGT
LOC_Os05g35680
OsAffx.27182.1.S1_at--721--5531Chr05:21112451..21112475 (25 bp)
GAAAAAGCGAGTGGGCCGCATAGCT
LOC_Os05g35680
OsAffx.27182.1.S1_at--90--4971Chr05:21112434..21112458 (25 bp)
GCATAGCTATGATTGGTTTTCGCAT
LOC_Os05g35680
OsAffx.27182.1.S1_at--880--8571Chr05:21112421..21112445 (25 bp)
TGGTTTTCGCATCTCTCTAGAGGAA
LOC_Os05g35680
OsAffx.27182.1.S1_at--1151--4251Chr05:21112390..21112414 (25 bp)
CCTGGCGCCTTGCTCTGCAAAAAGG
LOC_Os05g35680
OsAffx.27182.1.S1_at--151--2891Chr05:21112285..21112309 (25 bp)
AAGGGTGCCACAAGCAGATCGACCG
LOC_Os05g35680
OsAffx.27182.1.S1_at--273--5831Chr05:21112265..21112289 (25 bp)
GACCGTGTGCCATTGCCGCTCGAAA
LOC_Os05g35680
OsAffx.27182.1.S1_at--926--71Chr05:21112254..21112278 (25 bp)
ATTGCCGCTCGAAACGAGGGCGCTC
LOC_Os05g35680
OsAffx.27182.1.S1_at--982--7691Chr05:21111896..21111920 (25 bp)
GGTGGCGTCGTCCTAAGTCCCCATG
LOC_Os05g35680
Target Sequence 
TGTCTAGCCCTTTCACAGTGCAAGTTCGTGGCGCGTTACCTGGTCTACGTGGAGGAAAAAGCGAGTGGGCCGCATAGCTA
TGATTGGTTTTCGCATCTCTCTAGAGGAACGAGAGCCTGGCGCCTTGCTCTGCAAAAAGGCCGGTGCAGCCTTGGTGGTG
AGCGTGGCCGTGGTCCTCCAAAGCCGGTGAAGCTGCTCAGCCGTCGGGGTTGCCGTTGCCAAGGGTGCCACAAGCAGATC
GACCGTGTGCCATTGCCGCTCGAAACGAGGGCGCTCCAGACCGCCGTCGCCGCCTCGTCGATCTCGAGTGGCGGTGGCGT
CGTCCTAAGTCCCCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27182.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis