Browse Element(s) Details


Os.17900.1.S1_s_at

Description gb:BI803310
DB_XREF= gi:16576014
DB_XREF=H106F11
CLONE=H106F11
TID=Os.17900.1
CNT=8
FEA=EST
TIER=Stack
STK=6
UG=Os.17900 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein sp:P46688 (A.thaliana) GAS2_ARATH Gibberellin-regulated protein 2 precursor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3569011/11Gibberellin-regulated protein 2 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35650Os.53707.1.S1_x_at1/115+21088676..21103104POT family protein, expressed
LOC_Os05g35660OsAffx.27975.1.S1_at10/115+21103583..21104337hypothetical protein
LOC_Os05g35670OsAffx.4533.1.S1_at10/115+21107614..21108377oligopeptide transporter, putative
LOC_Os05g35680OsAffx.27182.1.S1_at11/115+21111539..21112761hypothetical protein
LOC_Os05g35690Os.17900.1.S1_s_at11/115+21114928..21115803Gibberellin-regulated protein 2 precursor, putative, expressed
LOC_Os05g35700NANA5+21116650..21117224hypothetical protein
LOC_Os05g35710Os.8839.1.S1_at11/115+21118679..21121719expressed protein
LOC_Os05g35710Os.8839.2.S1_at11/115+21118679..21121719expressed protein
LOC_Os05g35710Os.8839.2.S1_x_at11/115+21118679..21121719expressed protein
LOC_Os05g35720Os.18304.1.S1_at9/115+21122681..21124515TMEM18 protein, putative, expressed
LOC_Os05g35730Os.32965.1.S1_at11/115+21124736..21131244hydrolase, alpha/beta fold family protein, expressed
LOC_Os05g35740Os.9669.1.S1_at11/115+21131630..21133724Pi starvation-induced protein, putative, expressed
LOC_Os05g35750Os.35344.18.S1_x_at10/115+21135933..21138775hypothetical protein
LOC_Os05g35750Os.35344.3.S1_x_at9/115+21135933..21138775hypothetical protein
LOC_Os05g35750OsAffx.22940.5.S1_at7/115+21135933..21138775hypothetical protein
LOC_Os05g35750OsAffx.22940.5.S1_x_at5/115+21135933..21138775hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009739biological_processresponse to gibberellic acid stimulus
GO:0009741biological_processresponse to brassinosteroid stimulus
GO:0009826biological_processunidimensional cell growth
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17900.1.S1_s_at--996--411Chr05:21115508..21115532 (25 bp)
ATCATCTCGACCAATATATCACCGC
LOC_Os05g35690
Os.17900.1.S1_s_at--919--5851Chr05:21115516..21115540 (25 bp)
GACCAATATATCACCGCTCGATCAC
LOC_Os05g35690
Os.17900.1.S1_s_at--766--10251Chr05:21115552..21115576 (25 bp)
TTTGCTATCCAACCGACCGGTGATG
LOC_Os05g35690
Os.17900.1.S1_s_at--159--7391Chr05:21115571..21115595 (25 bp)
GTGATGATACATGGCGGCAACCTTG
LOC_Os05g35690
Os.17900.1.S1_s_at--734--8231Chr05:21115586..21115610 (25 bp)
GGCAACCTTGTGATGATCCTAGCTA
LOC_Os05g35690
Os.17900.1.S1_s_at--542--1551Chr05:21115610..21115634 (25 bp)
AGCTAGATGTGCTACCTACTTCGTG
LOC_Os05g35690
Os.17900.1.S1_s_at--702--9891Chr05:21115626..21115650 (25 bp)
TACTTCGTGCCTGCATGCATGTAGC
LOC_Os05g35690
Os.17900.1.S1_s_at--644--4991Chr05:21115642..21115666 (25 bp)
GCATGTAGCTTGCATATGCATGCTA
LOC_Os05g35690
Os.17900.1.S1_s_at--951--4871Chr05:21115672..21115696 (25 bp)
GCTATATCGCGTATTTGCTACTTGG
LOC_Os05g35690
Os.17900.1.S1_s_at--895--4951Chr05:21115715..21115739 (25 bp)
GCATATATATGTGGCGTGTCGTGAT
LOC_Os05g35690
Os.17900.1.S1_s_at--664--791Chr05:21115723..21115747 (25 bp)
ATGTGGCGTGTCGTGATCGATCGAT
LOC_Os05g35690
Target Sequence 
ATCATCTCGACCAATATATCACCGCTCGATCACCGCGCCGCCGCTTTGCTATCCAACCGACCGGTGATGATACATGGCGG
CAACCTTGTGATGATCCTAGCTAGCTAGATGTGCTACCTACTTCGTGCCTGCATGCATGTAGCTTGCATATGCATGCTAG
CTTTGCTATATCGCGTATTTGCTACTTGGAATATGTATGATGTGTGTGCATATATATGTGGCGTGTCGTGATCGATCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17900.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis