Browse Element(s) Details


Os.18304.1.S1_at

Description gb:AK072834.1
DB_XREF= gi:32982857
TID=Os.18304.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18304 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023139M04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023139M04, full insert sequence.
FL= gb:AK072834.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g357209/11TMEM18 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35650Os.53707.1.S1_x_at1/115+21088676..21103104POT family protein, expressed
LOC_Os05g35660OsAffx.27975.1.S1_at10/115+21103583..21104337hypothetical protein
LOC_Os05g35670OsAffx.4533.1.S1_at10/115+21107614..21108377oligopeptide transporter, putative
LOC_Os05g35680OsAffx.27182.1.S1_at11/115+21111539..21112761hypothetical protein
LOC_Os05g35690Os.17900.1.S1_s_at11/115+21114928..21115803Gibberellin-regulated protein 2 precursor, putative, expressed
LOC_Os05g35700NANA5+21116650..21117224hypothetical protein
LOC_Os05g35710Os.8839.1.S1_at11/115+21118679..21121719expressed protein
LOC_Os05g35710Os.8839.2.S1_at11/115+21118679..21121719expressed protein
LOC_Os05g35710Os.8839.2.S1_x_at11/115+21118679..21121719expressed protein
LOC_Os05g35720Os.18304.1.S1_at9/115+21122681..21124515TMEM18 protein, putative, expressed
LOC_Os05g35730Os.32965.1.S1_at11/115+21124736..21131244hydrolase, alpha/beta fold family protein, expressed
LOC_Os05g35740Os.9669.1.S1_at11/115+21131630..21133724Pi starvation-induced protein, putative, expressed
LOC_Os05g35750Os.35344.18.S1_x_at10/115+21135933..21138775hypothetical protein
LOC_Os05g35750Os.35344.3.S1_x_at9/115+21135933..21138775hypothetical protein
LOC_Os05g35750OsAffx.22940.5.S1_at7/115+21135933..21138775hypothetical protein
LOC_Os05g35750OsAffx.22940.5.S1_x_at5/115+21135933..21138775hypothetical protein
LOC_Os05g35760OsAffx.27184.1.S1_at11/115+21141660..21143541Serine/threonine-protein kinase SAPK7, putative
LOC_Os05g35760Os.44554.1.A1_at1/115+21141660..21143541Serine/threonine-protein kinase SAPK7, putative
LOC_Os05g35760Os.56292.1.S1_x_at1/115+21141660..21143541Serine/threonine-protein kinase SAPK7, putative
LOC_Os05g35770OsAffx.27185.1.S1_at11/115+21146238..21147844Serine/threonine-protein kinase SAPK9, putative
LOC_Os05g35780NANA5+21149277..21149765hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18304.1.S1_at--1160--611NONE
ATGCTGTTTCTTGCCTATTCAGGAG
NONE
Os.18304.1.S1_at--85--5931Chr05:21123927..21123951 (25 bp)
GAGCATTGCCACACGAAATTACTTC
LOC_Os05g35720
Os.18304.1.S1_at--575--1191Chr05:21123963..21123987 (25 bp)
AGTTTTTGTTTCTGTCGTCTGGTCG
LOC_Os05g35720
Os.18304.1.S1_at--470--7251Chr05:21123989..21124013 (25 bp)
GTCCCCTTATCTTCATATCTATGGT
LOC_Os05g35720
Os.18304.1.S1_at--270--7891Chr05:21124138..21124162 (25 bp)
GGTTAGCTCCCTTATTACATTATGT
LOC_Os05g35720
Os.18304.1.S1_at--861--1431Chr05:21124189..21124213 (25 bp)
AGAACTAAGGCATCGGGCTCAGCTT
LOC_Os05g35720
Os.18304.1.S1_at--528--4831Chr05:21124205..21124229 (25 bp)
GCTCAGCTTGCTCGTGACAAACAGG
LOC_Os05g35720
Os.18304.1.S1_at--291--5991Chr05:21124271..21124295 (25 bp)
GAGACATGCGTCTTCTAGAATTGTA
LOC_Os05g35720
Os.18304.1.S1_at--164--1231Chr05:21124327..21124351 (25 bp)
AGTTGCTTGCTGCTAGTAACTTACT
LOC_Os05g35720
Os.18304.1.S1_at--137--4651Chr05:21124352..21124376 (25 bp)
GCGTCGGTTATATTCTGGTGTTCAT
LOC_Os05g35720
Os.18304.1.S1_at--421--3171Chr05:21124492..21124516 (25 bp)
AATTGCAAACTGCATCCTTGTGCTA
NONE
Target Sequence 
ATGCTGTTTCTTGCCTATTCAGGAGTTTATCTTGCTGAAAAGATAAATAGCTATATGGCAGAGCACTGGAAGAGCATTGC
CACACGAAATTACTTCGACCGCGCTGGNAGTTTTTGTTTCTGTCGTCTGGTCGGGTCCCCTTATCTTCATATCTATGGTC
ATNNNGGTTAGCTCCCTTATTACATTATGTCGGTTGATGGNGAAATGGAAGAGAGCAGAACTAAGGCATCGGGCTCAGCT
TGCTCGTGACAAACAGGATTGACTGAAAGGTTCCTTAGTCTGGTAGAAGAAATGATTAGAGACATGCGTCTTCTAGAATT
GTAACTGTTGGTGTTTAATCACCTGATGTTTTTCAGTTGCTTGCTGCTAGTAACTTACTGCGTCGGTTATATTCTGGTGT
TCATGAACTCTAGTAACAGCTAAAAACAGAAATACTAGACCCAGTATCTGATTTCATCATGTTTTGGTTCAGTAGCCACG
AACATGGATGTGTAATTTTATTTAAAATCGATTGTGATAAATTGCAAACTGCATCCTTGTGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18304.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis