Browse Element(s) Details


Os.40288.1.S1_x_at

Description gb:CB664862
DB_XREF= gi:29668587
DB_XREF=OSJNEd10N11.r
CLONE=OSJNEd10N11
TID=Os.40288.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.40288 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_565611.1 (A.thaliana) putative poly
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g244401/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g160601/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g149301/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g375541/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g237501/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g394001/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g225901/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g196701/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g24420NANA6+14300913..14309736transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g24430Os.10626.4.A1_s_at11/116+14314897..14315520hypothetical protein
LOC_Os06g24440Os.14491.2.S1_x_at3/116+14318274..14324852transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g24440Os.47463.1.S1_x_at3/116+14318274..14324852transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g24440Os.40288.1.S1_x_at1/116+14318274..14324852transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g24440Os.41248.4.S1_x_at1/116+14318274..14324852transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g24450NANA6+14325222..14327797retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g24460NANA6+14331375..14331900PDR-type ABC transporter 1, putative
LOC_Os06g24470OsAffx.4928.1.S1_at11/116+14336586..14338038hypothetical protein
LOC_Os06g24470OsAffx.8319.1.S1_x_at1/116+14336586..14338038hypothetical protein
LOC_Os06g24480NANA6+14341649..14342274hypothetical protein
LOC_Os06g24490Os.53277.1.S1_at11/116+14346072..14347227expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40288.1.S1_x_at--108--6771Chr08:10798548..10798572 (25 bp)
GTTAAGTAAATAAGTACTGCTTGGT
NONE
Os.40288.1.S1_x_at--871--5311Chr08:10798641..10798665 (25 bp)
GAAGTGTAGCAAGTTAGTTCGCCGC
NONE
Os.40288.1.S1_x_at--1078--8751Chr08:10798645..10798669 (25 bp)
TGTAGCAAGTTAGTTCGCCGCAAGC
NONE
Os.40288.1.S1_x_at--372--6711Chr08:10798657..10798681 (25 bp)
GTTCGCCGCAAGCTCATGTTTTGTC
NONE
Os.40288.1.S1_x_at--867--4511Chr08:10798661..10798685 (25 bp)
GCCGCAAGCTCATGTTTTGTCCACT
NONE
Os.40288.1.S1_x_at--1079--3231Chr08:10798665..10798689 (25 bp)
CAAGCTCATGTTTTGTCCACTGAAG
NONE
Os.40288.1.S1_x_at--999--2691Chr08:10798666..10798690 (25 bp)
AAGCTCATGTTTTGTCCACTGAAGT
NONE
Os.40288.1.S1_x_at--204--9351NONE
TCGCGGATGAGGCAACTGTCGGTCA
NONE
Os.40288.1.S1_x_at--1029--671NONE
ATGAGGCAACTGTCGGTCAGGGTGG
NONE
Os.40288.1.S1_x_at--909--1891NONE
ACGTCCGGGATGCTGCTTTTAGTGA
NONE
Os.40288.1.S1_x_at--798--87760Chr11:12925616..12925662 (25 bp)
TGTTTCTTGAAATAGATAACTCCTT
LOC_Os11g23750
Target Sequence 
GTTAAGTAAATAAGTACTGCTTGGTNTTAGTGATCGACAACTGCNTGTGTTGCAGCTTGACTAACAAATCACTGAGTNTG
AGAAATAAGAGTGGAAGTGTAGCAAGTTAGTTCGCCGCAAGCTCATGTTTTGTCCACTGAAGTATTTGCATCACTTGTGT
ATTCCTTCGTGCGTGTGTGACCTCNCGTGTGTTTGTTGTTTNTNTGGGCCAANNNNCACAGGGCTGGGTGGAGTCGCGGA
TGAGGCAACTGTCGGTCAGGGTGGAGGCGGACACGTCCGGGATGCTGCTTTTAGTGATATGCCCTATAGGCAATCATGGA
GATGATTGTATCACATACTATGTTTACATATTTATCCGACATTGTTTCTTGAAATAGATAACTCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40288.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis